RNA–Protein interactions for RNA: ENST00000336798.11

SDC3-201, Transcript of syndecan 3, humanhuman

TSL 1 (best) BASIC

Gene SDC3, Length 6,392 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-201ENST00000336798 EXOSC3Q9NQT5 275 aaKnown RBP11.55□□□□□ -0.56
SDC3-201ENST00000336798 PROCRQ9UNN8 238 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ARL2-SNX15V9GYD0 113 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MYH15Q9Y2K3 1946 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 LINC01553A4QN01 128 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 TMEM235A6NFC5 223 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 IL2RAP01589 272 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 CD27P26842 260 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PFN3P60673 137 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 DUSP5Q16690 384 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SPATA46Q5T0L3 261 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ANKLE1Q8NAG6 615 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 OR52N5Q8NH56 324 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 NIPSNAP3BQ9BS92 247 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PTDSS2Q9BVG9 487 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MARCH5Q9NX47 278 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SAGE1Q9NXZ1 904 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 RAB22AQ9UL26 194 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 GOLT1BQ9Y3E0 138 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 FMN2Q9NZ56 1722 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 C7orf72A4D263 438 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 GPR37O15354 613 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 WDR1O75083 606 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SCG5P05408 212 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 KCTD11Q693B1 232 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 PRR27Q6MZM9 219 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 LRRC56Q8IYG6 542 aaPredicted RBP11.55□□□□□ -0.56
SDC3-201ENST00000336798 OR5M9Q8NGP3 310 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 ZBP1Q9H171 429 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 MUTYHQ9UIF7 546 aa11.55□□□□□ -0.56
SDC3-201ENST00000336798 SERTM1A2A2V5 107 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 CR2P20023 1033 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 GCAP28676 217 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 SUB1P53999 127 aaKnown RBP eCLIP11.54□□□□□ -0.56
SDC3-201ENST00000336798 TMEM123Q8N131 208 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 TAF9BQ9HBM6 251 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ZNF331Q9NQX6 463 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 THAP10Q9P2Z0 257 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 HS3ST2Q9Y278 367 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 MEX3AA1L020 520 aaKnown RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 SDCBPO00560 298 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 KLKB1P03952 638 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 TCRBP04435 133 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 TEAD1P28347 426 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 PIGAP37287 484 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 HSF1Q00613 529 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 IL10RAQ13651 578 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 NKAIN1Q4KMZ8 207 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 C17orf107Q6ZR85 190 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 OR5B3Q8NH48 314 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 PKMYT1Q99640 499 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 PLA2G12AQ9BZM1 189 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 SLC2A8Q9NY64 477 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 TERTO14746 1132 aaKnown RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 ALOX5APP20292 161 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 RPS27P42677 84 aaKnown RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 BTG2P78543 158 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 PLA1AQ53H76 456 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ZNF385BQ569K4 471 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ZFP62Q8NB50 900 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 SLC16A6O15403 523 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 CPEP16870 476 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ZNF133P52736 654 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 ADPRHP54922 357 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 OR5I1Q13606 314 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ABHD17CQ6PCB6 329 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 RETREG3Q86VR2 466 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 ZNF2Q9BSG1 426 aaPredicted RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 A4GALTQ9NPC4 353 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 PSORS1C1Q9UIG5 152 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 CD14P08571 375 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 TBXA2RP21731 343 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 KIAA1024LP59773 190 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 RPL27P61353 136 aaKnown RBP11.54□□□□□ -0.56
SDC3-201ENST00000336798 BCORP1Q8N888 145 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 GON4LQ3T8J9 2241 aa11.54□□□□□ -0.56
SDC3-201ENST00000336798 NCBP2LA6PVI3 153 aaKnown RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 YKT6O15498 198 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 HOXC11O43248 304 aaPredicted RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 TGOLN2O43493 480 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 GLCEO94923 617 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 TM4SF4P48230 202 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ZNF266Q14584 549 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 C5orf46Q6UWT4 87 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 ETFBKMTQ8IXQ9 262 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 C11orf42Q8N5U0 333 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 CCL4L1Q8NHW4 92 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 SPPL3Q8TCT6 385 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 RNF141Q8WVD5 230 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 C14orf79Q96F83 325 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 C11orf54Q9H0W9 315 aaPredicted RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 NT5DC2Q9H857 520 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 MMACHCQ9Y4U1 282 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 GPR171O14626 319 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 LCN15Q6UWW0 184 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 LSMEM2Q8N112 164 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 CISD2Q8N5K1 135 aaKnown RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 PDLIM5Q96HC4 596 aaKnown RBP11.53□□□□□ -0.56
SDC3-201ENST00000336798 CSF3RQ99062 836 aa11.53□□□□□ -0.56
SDC3-201ENST00000336798 R3HDMLQ9H3Y0 253 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms