RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 LEG1Q6P5S2 330 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 RASSF6Q6ZTQ3 369 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 SYT9Q86SS6 491 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 OR10H5Q8NGA6 315 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 ZFAND2BQ8WV99 257 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 LRTOMTQ8WZ04 291 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 SNX18Q96RF0 628 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 VRK1Q99986 396 aaPredicted RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 OR51B6Q9H340 312 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 MYEF2Q9P2K5 600 aaKnown RBP13.61□□□□□ -0.23
CLN3-201ENST00000333496 FZR1Q9UM11 496 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 TIMM10BQ9Y5J6 103 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 CDH10Q9Y6N8 788 aa13.61□□□□□ -0.23
CLN3-201ENST00000333496 IGHV4-30-2A0A087WSY4 118 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 IGLV1-36A0A0B4J1U3 117 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 OR6C68A6NDL8 312 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 BHLHE40O14503 412 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 IDH3BO43837 385 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 EVX1P49640 407 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 UCP2P55851 309 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 ERVS71-1P61550 626 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 ZNF362Q5T0B9 420 aaPredicted RBP13.6□□□□□ -0.23
CLN3-201ENST00000333496 SLC35F1Q5T1Q4 408 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 ZNF774Q6NX45 483 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 GLB1L2Q8IW92 636 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 OR6V1Q8N148 313 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 MAPK1IP1LQ8NDC0 245 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 OR1J2Q8NGS2 313 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 NIPSNAP1Q9BPW8 284 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 SYT3Q9BQG1 590 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 DGCR6LQ9BY27 220 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 B9D1Q9UPM9 204 aa13.6□□□□□ -0.23
CLN3-201ENST00000333496 SMIM31A0A1B0GVY4 71 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 C12orf71A8MTZ7 269 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 FCGR1AP12314 374 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 CCNOP22674 350 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 PCSK6P29122 969 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 WNT5AP41221 380 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 PCBD1P61457 104 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 RPS23P62266 143 aaKnown RBP13.59□□□□□ -0.23
CLN3-201ENST00000333496 FOXB2Q5VYV0 432 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 RPL13AP3Q6NVV1 102 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 JAZF1Q86VZ6 243 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 ZNF101Q8IZC7 436 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 NPEPL1Q8NDH3 523 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 SDR9C7Q8NEX9 313 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 OR10G2Q8NGC3 310 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 C11orf40Q8WZ69 217 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 DDOQ99489 341 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 WACQ9BTA9 647 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 REG4Q9BYZ8 158 aa13.59□□□□□ -0.23
CLN3-201ENST00000333496 SRA1Q9HD15 236 aaKnown RBP13.59□□□□□ -0.23
CLN3-201ENST00000333496 CSPG4Q6UVK1 2322 aa13.58□□□□□ -0.23
CLN3-201ENST00000333496 A0A096LNT2 108 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 C5orf49A4QMS7 147 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 TNFAIP8O95379 198 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 LY6G6DO95868 133 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 GAAP10253 952 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 ZNF250P15622 560 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 HOXB6P17509 224 aaKnown RBP13.58□□□□□ -0.24
CLN3-201ENST00000333496 FASP25445 335 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 NOS3P29474 1203 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 CRABP1P29762 137 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 LSM6P62312 80 aaKnown RBP13.58□□□□□ -0.24
CLN3-201ENST00000333496 GK3PQ14409 553 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 KCNMB1Q16558 191 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 RGS7BPQ6MZT1 257 aaPredicted RBP13.58□□□□□ -0.24
CLN3-201ENST00000333496 Q71RC1 249 aaPredicted RBP13.58□□□□□ -0.24
CLN3-201ENST00000333496 AMIGO2Q86SJ2 522 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 ZBTB46Q86UZ6 589 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 ALDH16A1Q8IZ83 802 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 OR52L1Q8NGH7 329 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 OR52E2Q8NGJ4 325 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 FEVQ99581 238 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 RHNO1Q9BSD3 238 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 FN3KQ9H479 309 aa13.58□□□□□ -0.24
CLN3-201ENST00000333496 RPRD1BQ9NQG5 326 aaKnown RBP13.58□□□□□ -0.24
CLN3-201ENST00000333496 ABCA1O95477 2261 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SYNGR3O43761 229 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SOX14O95416 240 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 CLPTM1O96005 669 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 RENP00797 406 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 ADRA2AP08913 450 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 RAD52P43351 418 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 GDI2P50395 445 aaKnown RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.57□□□□□ -0.24
CLN3-201ENST00000333496 AQP6Q13520 282 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 MEP1BQ16820 701 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 CLEC2AQ6UVW9 174 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 CLEC9AQ6UXN8 241 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 CD300LDQ6UXZ3 194 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 OR4Q3Q8NH05 313 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 GIPC3Q8TF64 312 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 TSSK6Q9BXA6 273 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 BCL2L14Q9BZR8 327 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 RAB1BQ9H0U4 201 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 SEMA6AQ9H2E6 1030 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 ZNF696Q9H7X3 374 aa13.57□□□□□ -0.24
CLN3-201ENST00000333496 PAPOLBQ9NRJ5 636 aaKnown RBP13.57□□□□□ -0.24
CLN3-201ENST00000333496 ASH2LQ9UBL3 628 aa13.57□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms