RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 EBPLQ9BY08 206 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 EGLN1Q9GZT9 426 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TREM2Q9NZC2 230 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 GFYI3L273 518 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 GOSR2O14653 212 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CDKN2DP55273 166 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PKIAP61925 76 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 RPS13P62277 151 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ABI3BPQ7Z7G0 1075 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SLCO4A1Q96BD0 722 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 AMBRA1Q9C0C7 1298 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ENKD1Q9H0I2 346 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NMUR1Q9HB89 426 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF331Q9NQX6 463 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 WBP1LQ9NX94 342 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MTFP1Q9UDX5 166 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 K7ERU9 68 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 AP4M1O00189 453 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 HOXA3O43365 443 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CSTAP01040 98 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NID1P14543 1247 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CRISP2P16562 243 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF8P17098 575 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 USF1P22415 310 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OTX2P32243 289 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MNX1P50219 401 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 UBE2G1P62253 170 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SEMG2Q02383 582 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SLC10A2Q12908 348 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 DUSP8Q13202 625 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 IL13RA2Q14627 380 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 GRM7Q14831 915 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 C19orf48Q6RUI8 117 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 Q6ZSR9 355 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CATSPERDQ86XM0 798 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 EXD3Q8N9H8 876 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR2AK2Q8NG84 335 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR52H1Q8NGJ2 320 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR13C4Q8NGS5 318 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 HMGCLL1Q8TB92 370 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TSLPQ969D9 159 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SGPP1Q9BX95 441 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SLC23A2Q9UGH3 650 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 B3GALT5Q9Y2C3 310 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NPTNQ9Y639 398 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TSPAN11A1L157 253 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SLC9B1P1A6NJY1 282 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ENPP3O14638 875 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 LAMTOR5O43504 91 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 STBD1O95210 358 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 DUS4LO95620 317 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CDS2O95674 445 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CBX7O95931 251 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TRHRP34981 398 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ADPRHP54922 357 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 HIST1H3AP68431 136 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PDZK1IP1Q13113 114 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CLINT1Q14677 625 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MPV17LQ2QL34 196 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ANKRD9Q96BM1 317 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR10A5Q9H207 317 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR10A2Q9H208 303 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 FZD1Q9UP38 647 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 C11orf98E9PRG8 122 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SLC17A2O00624 439 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR4E1P0C645 316 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 DUSP1P28562 367 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 UBE2KP61086 200 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CDK5R1Q15078 307 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF239Q16600 458 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TMEM183BQ1AE95 376 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 LRRC73Q5JTD7 316 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 DGAT2L7PQ6IED9 249 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MRM1Q6IN84 353 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TFAP2EQ6VUC0 442 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MAML2Q8IZL2 1156 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OR6N2Q8NGY6 317 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 LMX1AQ8TE12 382 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MRGPRX4Q96LA9 322 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SAMD8Q96LT4 415 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 P2RX4Q99571 388 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 C12orf57Q99622 126 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NMNAT2Q9BZQ4 307 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 NTN4Q9HB63 628 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 OBP2BQ9NPH6 170 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ACER3Q9NUN7 267 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 AP5S1Q9NUS5 200 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 PADI3Q9ULW8 664 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 MED16Q9Y2X0 877 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 TRBV9A0A0B4J1U6 114 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 ZNF98A6NK75 572 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 CLDN34H7C241 214 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 B4GALT2O60909 372 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SOD1P00441 154 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 FAM3BP58499 235 aaPredicted RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 VGLL4Q14135 290 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 GANABQ14697 944 aaKnown RBP4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SDR9C7Q8NEX9 313 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 SYNPRQ8TBG9 265 aa4.82□□□□□ -1.64
SCN1A-201ENST00000303395 COPS9Q8WXC6 57 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms