RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 GPR62Q9BZJ7 368 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 C20orf85Q9H1P6 137 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 OR52D1Q9H346 318 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 DKKL1Q9UK85 242 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ZNF281Q9Y2X9 895 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 PRSS21Q9Y6M0 314 aa5.88□□□□□ -1.47
VPS35-201ENST00000299138 ADAMTS4O75173 837 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ELK1P19419 428 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 GPR4P46093 362 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 HSD17B7P56937 341 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 FABP5Q01469 135 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CDKN3Q16667 212 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LTC4SQ16873 150 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ARSIQ5FYB1 569 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SDHAF4Q5VUM1 108 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ZNF626Q68DY1 528 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR4C11Q6IEV9 310 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CPOQ8IVL8 374 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SLC38A6Q8IZM9 456 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ZNF610Q8N9Z0 462 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 FAM46AQ96IP4 442 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 UBQLN3Q9H347 655 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 RCE1Q9Y256 329 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 EDDM13A0A1B0GTR0 161 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 A0A1W2PPQ1 181 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 NPIPB15A6NHN6 443 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 SLC9B1P1A6NJY1 282 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 DBX1A6NMT0 343 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 FAM171A2A8MVW0 826 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OGG1O15527 345 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR2J2O76002 312 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 C1orf105O95561 183 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 GABRA1P14867 456 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 NPPBP16860 134 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CD80P33681 288 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 MEOX2P50222 304 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CCR6P51684 374 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 DNLZQ5SXM8 178 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CST9Q5W186 159 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 RNASEKQ6P5S7 137 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 TMPPEQ6ZT21 453 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SIAH3Q8IW03 269 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 GLB1L2Q8IW92 636 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 BVESQ8NE79 360 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 DMBX1Q8NFW5 382 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 NLGN4YQ8NFZ3 816 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 LCN9Q8WX39 176 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 EHFQ9NZC4 300 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 GABRQQ9UN88 632 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SSUH2Q9Y2M2 353 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 A0A0A6YYJ9 748 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 A6NIZ1 184 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR5AL1P0C617 328 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ACP5P13686 325 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 PTAFRP25105 342 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 PTGER4P35408 488 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ARRB1P49407 418 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 PCBP4P57723 403 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 RAP1BP61224 184 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 UBE2IP63279 158 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 DMKNQ6E0U4 476 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 ADAMTSL4Q6UY14 1074 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TFAP2EQ6VUC0 442 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CARFQ8N187 725 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TCTEX1D1Q8N7M0 179 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LKAAEAR1Q8TD35 194 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LMF2Q9BU23 707 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 SHARPINQ9H0F6 387 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LPAR5Q9H1C0 372 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CXorf36Q9H7Y0 433 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ZNFX1Q9P2E3 1918 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 DICER1Q9UPY3 1922 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 A0A087WUU8 490 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ZNF593O00488 134 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 CDK2AP1O14519 115 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TUSC2O75896 110 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CLDN1O95832 211 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TBX18O95935 607 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ACSM4P0C7M7 580 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 PNMTP11086 282 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ARSAP15289 507 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SUCLG1P53597 346 aaKnown RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 EFNB1P98172 346 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 CDK5R1Q15078 307 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TOMM34Q15785 309 aaPredicted RBP5.87□□□□□ -1.47
VPS35-201ENST00000299138 VWA2Q5GFL6 755 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LIPNQ5VXI9 398 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR4F5Q8NH21 305 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 BMFQ96LC9 184 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR4F4Q96R69 305 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 G6PC3Q9BUM1 346 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SLC6A13Q9NSD5 602 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 LAMP3Q9UQV4 416 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 WIF1Q9Y5W5 379 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 A0A087WV62 115 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 MFSD2BA6NFX1 497 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 ZNF217O75362 1048 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 TSPAN13O95857 204 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 OR4Q2P0C623 313 aa5.87□□□□□ -1.47
VPS35-201ENST00000299138 SLC25A4P12235 298 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms