RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 SERTM2A0A1B0GWG4 89 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 H7C1C5 153 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 FOLR3P41439 243 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 TMEM104Q8NE00 496 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 YIPF6Q96EC8 236 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 MED13LQ71F56 2210 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 TRDV1A0A1B0GX56 115 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 LDB3O75112 727 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 TIMP1P01033 207 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 OR2T7P0C7T2 308 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 OR8B8Q15620 311 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 FAM162BQ5T6X4 162 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 SYT13Q7L8C5 426 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 FOXJ1Q92949 421 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 ASB1Q9Y576 335 aa9.07□□□□□ -0.96
COL6A3-201ENST00000295550 FAM71E1Q6IPT2 247 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CBLCQ9ULV8 474 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 JTBO76095 146 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 APEHP13798 732 aaKnown RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 RABIFP47224 123 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 HHEXQ03014 270 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 OR13C8Q8NGS7 320 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 OR10J5Q8NHC4 309 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 NIPSNAP1Q9BPW8 284 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 HEYLQ9NQ87 328 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 PADI1Q9ULC6 663 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 SUSD5O60279 629 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 FPR3P25089 353 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 APEX1P27695 318 aaKnown RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 PTGER1P34995 402 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 OR13D1Q8NGV5 346 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 SLC46A2Q9BY10 475 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 ZSWIM8A7E2V4 1837 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 TMEM129A0AVI4 362 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 BAMBIQ13145 260 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CCNL2Q96S94 520 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 MS4A8Q9BY19 250 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 IFT22Q9H7X7 185 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 RFPL4AA6NLU0 287 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 RFPL4AL1F8VTS6 287 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 H2BFWTQ7Z2G1 175 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 GPR119Q8TDV5 335 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 GPR160Q9UJ42 338 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 A0A0J9YY10 115 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 TRABD2BA6NFA1 517 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 ABOP16442 354 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 AMTP48728 403 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 ARG2P78540 354 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 KLHDC1Q8N7A1 406 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 OR5M11Q96RB7 305 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 DHRS9Q9BPW9 319 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 HDAC8Q9BY41 377 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 GSX2Q9BZM3 304 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 DUSP21Q9H596 190 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CXorf36Q9H7Y0 433 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 ZDHHC11Q9H8X9 412 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 PISDQ9UG56 409 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 TRBV5-4A0A0C4DH59 114 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 TSPAN12O95859 305 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CDK5Q00535 292 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 FAHD1Q6P587 224 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 WDR88Q6ZMY6 472 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 TMEM231Q9H6L2 316 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 STARD5Q9NSY2 213 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 SNX11Q9Y5W9 270 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 LGALS8O00214 317 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 EDN3P14138 238 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CR2P20023 1033 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 PSMB5P28074 263 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 HTR1FP30939 366 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 NXNL2Q5VZ03 156 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CLEC1AQ8NC01 280 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 OR52E1Q8NGJ3 308 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 LPAR4Q99677 370 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 SMIM7Q9BQ49 75 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 IL3RAP26951 378 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 ZNF93P35789 620 aaPredicted RBP9.06□□□□□ -0.96
COL6A3-201ENST00000295550 HTR5AP47898 357 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 RAB1AP62820 205 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 SAXO2Q658L1 398 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 CRLF2Q9HC73 371 aa9.06□□□□□ -0.96
COL6A3-201ENST00000295550 PRR35P0CG20 571 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 ZP3P21754 424 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 ITGB8P26012 769 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 IDUAP35475 653 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 RFX2P48378 723 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 ENDOGQ14249 297 aaKnown RBP9.05□□□□□ -0.96
COL6A3-201ENST00000295550 OR5M10Q6IEU7 315 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 VRK2Q86Y07 508 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 C11orf42Q8N5U0 333 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 PARD6AQ9NPB6 346 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 SLC17A1Q14916 467 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 CORO6Q6QEF8 472 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 OR2L13Q8N349 312 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 OR52I1Q8NGK6 324 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 SSUH2Q9Y2M2 353 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 COL6A6A6NMZ7 2263 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 A0A1B0GTW7 788 aa9.05□□□□□ -0.96
COL6A3-201ENST00000295550 TAAR5O14804 337 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 117.3 ms