RNA–Protein interactions for RNA: ENST00000637968.1

SCN1A-216, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,614 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-216ENST00000637968 TGIF2-C20orf24A0A0A6YYL0 155 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR51F1A6NGY5 319 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 VSTM2BA6NLU5 285 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SNAI1O95863 264 aaPredicted RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CTSLP07711 333 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FGF5P12034 268 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 AKR1C4P17516 323 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 IGFBP4P22692 258 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 NSG1P42857 185 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 CLDN10P78369 228 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SLAQ13239 276 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SRSF5Q13243 272 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 FZD5Q13467 585 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ENDOGQ14249 297 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 LASP1Q14847 261 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 RGNQ15493 299 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 AGBL4Q5VU57 503 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 C12orf73Q69YU5 71 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OPN5Q6U736 354 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF627Q7L945 461 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 GJD3Q8N144 294 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 OR4C16Q8NGL9 310 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 LKAAEAR1Q8TD35 194 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TMEM106AQ96A25 262 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 SCGB3A2Q96PL1 93 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PARP12Q9H0J9 701 aaKnown RBP5.25□□□□□ -1.57
SCN1A-216ENST00000637968 PLEKHA1Q9HB21 404 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 KLHL28Q9NXS3 571 aa5.25□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV18A0A075B6X5 111 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CPSF4LA6NMK7 179 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 NPIPA5E9PKD4 350 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 NPIPA3F8WFD2 350 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 GLSO94925 669 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ADH1BP00325 375 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CT45A8P0DMV1 189 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CT45A9P0DMV2 189 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 VSIG10L2P0DP72 767 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 LIPCP11150 499 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 RPIAP49247 311 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FXYD6P3P58550 94 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TAS2R31P59538 309 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 RPS23P62266 143 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CT45A2Q5DJT8 189 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 KCTD11Q693B1 232 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PODNL1Q6PEZ8 512 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TMPPEQ6ZT21 453 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CHST9Q7L1S5 443 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF429Q86V71 674 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FAM129CQ86XR2 697 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 WDFY1Q8IWB7 410 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CMTM1Q8IZ96 169 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 C12orf76Q8N812 135 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OR13C9Q8NGT0 318 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 HAVCR2Q8TDQ0 301 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SLC46A2Q9BY10 475 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SLC17A9Q9BYT1 436 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 NPIPA1Q9UND3 350 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 LHX6Q9UPM6 363 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FAM166BA8MTA8 275 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 C22orf46C9J442 243 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRAMEF26H0Y7S4 382 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 GNG7O60262 68 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 EIF4E2O60573 245 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRAMEF11O60813 436 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 GBAP04062 536 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CKMP06732 381 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 EPHX1P07099 455 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SFTPBP07988 381 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 CXCR1P25024 350 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 GPR4P46093 362 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 P2RX1P51575 399 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SOX8P57073 446 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TPPP2P59282 170 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRAMEF5Q5TYX0 476 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 MARC1Q5VT66 337 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRAMEF6Q5VXH4 476 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 NIT1Q86X76 327 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ZNF584Q8IVC4 421 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 OR4K2Q8NGD2 314 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FAM213BQ8TBF2 198 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 STT3BQ8TCJ2 826 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 RNASEH2CQ8TDP1 164 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FRZBQ92765 325 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ACY3Q96HD9 319 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 BTF3L4Q96K17 158 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 PRRT1Q99946 306 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 KATNBL1Q9H079 304 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SLC35D1Q9NTN3 355 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 RYDENQ9NUL5 291 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ARL15Q9NXU5 204 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 SF3B6Q9Y3B4 125 aaKnown RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 ZFP37Q9Y6Q3 630 aaPredicted RBP5.24□□□□□ -1.57
SCN1A-216ENST00000637968 V9GY05 133 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 BCORQ6W2J9 1755 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TRAV39A0A0B4J263 110 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 TRBV4-1A0A0J9YWV2 114 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 HEPACAM2A8MVW5 462 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FTCDNL1E5RQL4 147 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 FFAR2O15552 330 aa5.24□□□□□ -1.57
SCN1A-216ENST00000637968 GPANK1O95872 356 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms