RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 TNFRSF1BP20333 461 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 LSP1P33241 339 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 RAB1AP62820 205 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 GNGT1P63211 74 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 SELENOWP63302 87 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 CAMK2DQ13557 499 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 LINC00114Q6XXX2 140 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 PXKQ7Z7A4 578 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 SLC15A3Q8IY34 581 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 OR52E2Q8NGJ4 325 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 FGFBP3Q8TAT2 258 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 SYNPRQ8TBG9 265 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 FAM162AQ96A26 154 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 ELMOD3Q96FG2 381 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 TXNDC15Q96J42 360 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 SLC19A3Q9BZV2 496 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 POLR2J2Q9GZM3 115 aaKnown RBP13.04□□□□□ -0.32
LIG1-214ENST00000597146 POLR2J3Q9H1A7 115 aaKnown RBP13.04□□□□□ -0.32
LIG1-214ENST00000597146 DCAF16Q9NXF7 216 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 ADA2Q9NZK5 511 aa13.04□□□□□ -0.32
LIG1-214ENST00000597146 SRRM5B3KS81 715 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 OR5F1O95221 314 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 HPRP00739 348 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 CCL2P13500 99 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 HLA-DOBP13765 273 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 ZNF250P15622 560 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 FUT1P19526 365 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 SLC7A2P52569 658 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 BIDP55957 195 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 SELENOVP59797 346 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 PIN1Q13526 163 aaPredicted RBP13.03□□□□□ -0.32
LIG1-214ENST00000597146 HLXQ14774 488 aaPredicted RBP13.03□□□□□ -0.32
LIG1-214ENST00000597146 FAM189A2Q15884 450 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 DEFB112Q30KQ8 113 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 KPRPQ5T749 579 aaPredicted RBP13.03□□□□□ -0.32
LIG1-214ENST00000597146 RRM2BQ7LG56 351 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 NANOGNBQ7Z5D8 188 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 ICA1LQ8NDH6 482 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 MRAPQ8TCY5 172 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 SGTBQ96EQ0 304 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 KCTD14Q9BQ13 255 aaPredicted RBP13.03□□□□□ -0.32
LIG1-214ENST00000597146 FNDC11Q9BVV2 318 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 ULBP2Q9BZM5 246 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 CHIAQ9BZP6 476 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 CMTM6Q9NX76 183 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 SLCO1C1Q9NYB5 712 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 MED31Q9Y3C7 131 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 RNF114Q9Y508 228 aa13.03□□□□□ -0.32
LIG1-214ENST00000597146 DOCK11Q5JSL3 2073 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 A0A1W2PRG6 482 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 CXCR6O00574 342 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 UBOX5O94941 541 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 PLATP00750 562 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 IFNW1P05000 195 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 LCKP06239 509 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 CSNK1A1P48729 337 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 PSME3P61289 254 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 ST3GAL3Q11203 375 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 ZNF74Q16587 644 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 SPRNQ5BIV9 151 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 BRD3OSQ6XYD6 125 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 SLC35D2Q76EJ3 337 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 C20orf196Q8IYI0 205 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 TMEM239Q8WW34 195 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 LRR1Q96L50 414 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 PCDHAC1Q9H158 963 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 TCF7L1Q9HCS4 588 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 ZNF229Q9UJW7 825 aa13.02□□□□□ -0.33
LIG1-214ENST00000597146 POLR3KQ9Y2Y1 108 aaPredicted RBP13.02□□□□□ -0.33
LIG1-214ENST00000597146 FAM32AQ9Y421 112 aaKnown RBP13.02□□□□□ -0.33
LIG1-214ENST00000597146 SLC22A23A1A5C7 686 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 MCIDASD6RGH6 385 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 SPRY3O43610 288 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 ENTPD5O75356 428 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 IGHV1-46P01743 117 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 IGHV2-70P01814 119 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 MT-ND1P03886 318 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 THRBP10828 461 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 CD80P33681 288 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 RBM34P42696 430 aaKnown RBP13.01□□□□□ -0.33
LIG1-214ENST00000597146 YAP1P46937 504 aaKnown RBP13.01□□□□□ -0.33
LIG1-214ENST00000597146 GYS2P54840 703 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 MXRA7P84157 204 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 TMEM255AQ5JRV8 349 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 VAX1Q5SQQ9 334 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 SAMD5Q5TGI4 173 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 WDR88Q6ZMY6 472 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 ZNF627Q7L945 461 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 CYP4Z1Q86W10 505 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 NKAIN4Q8IVV8 208 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 ZDHHC16Q969W1 377 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 ZNF566Q969W8 418 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 FOXB1Q99853 325 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 ASH2LQ9UBL3 628 aa13.01□□□□□ -0.33
LIG1-214ENST00000597146 NOTCH3Q9UM47 2321 aa13□□□□□ -0.33
LIG1-214ENST00000597146 SNX3O60493 162 aa13□□□□□ -0.33
LIG1-214ENST00000597146 CLPXO76031 633 aa13□□□□□ -0.33
LIG1-214ENST00000597146 OR7A10O76100 309 aa13□□□□□ -0.33
LIG1-214ENST00000597146 UBL3O95164 117 aa13□□□□□ -0.33
LIG1-214ENST00000597146 THY1P04216 161 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 84.7 ms