RNA–Protein interactions for RNA: ENST00000593223.1

SMAD4-216, Transcript of SMAD family member 4, humanhuman

TSL 3

Gene SMAD4, Length 568 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD4-216ENST00000593223 SNAP91O60641 907 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PFKFB2O60825 505 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 TNNC2P02585 160 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 SNRPAP09012 282 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CYBAP13498 195 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 TBXA2RP21731 343 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 S100A1P23297 94 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PRDX3P30048 256 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PPP2R1BP30154 601 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 KDELR2P33947 212 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 UGT1A3P35503 534 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CFHR2P36980 270 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 SLC26A3P40879 764 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 AQP2P41181 271 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CCL23P55773 120 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 OSTNP61366 133 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 ERVK-25P63136 954 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 KCNJ2P63252 427 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 FKBP3Q00688 224 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CD300CQ08708 224 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 ZNF146Q15072 292 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PDK2Q15119 407 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 SPHARQ15513 63 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CDKN3Q16667 212 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 UPP1Q16831 310 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 IMPG1Q17R60 797 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 VPS26BQ4G0F5 336 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 TCEAL5Q5H9L2 206 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CDC42EP5Q6NZY7 148 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 ZNF841Q6ZN19 808 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 Q6ZVQ6 151 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 RFPL4BQ6ZWI9 263 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 APRG1Q8IVJ8 170 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 DND1Q8IYX4 353 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 ZBED8Q8IZ13 594 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PARP8Q8N3A8 854 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 OR4A4PQ8NGN8 299 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 OR5M1Q8NGP8 315 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 OR4L1Q8NH43 312 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 SPPL2AQ8TCT8 520 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 DTD1Q8TEA8 209 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 P3H4Q92791 437 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 MAP1LC3CQ9BXW4 147 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 PORCNQ9H237 461 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 VCX3AQ9NNX9 186 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 RPS10P5Q9NQ39 176 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 EXD2Q9NVH0 621 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 MYEF2Q9P2K5 600 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CTSZQ9UBR2 303 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 MIOXQ9UGB7 285 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 KIF25Q9UIL4 384 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 MRTO4Q9UKD2 239 aaKnown RBP3.95□□□□□ -1.78
SMAD4-216ENST00000593223 AUP1Q9Y679 476 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 CDH10Q9Y6N8 788 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 NOTCH3Q9UM47 2321 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 KIF20BQ96Q89 1820 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 C2CD3Q4AC94 2353 aa3.95□□□□□ -1.78
SMAD4-216ENST00000593223 MED23Q9ULK4 1368 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 PHIPQ8WWQ0 1821 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 IGHV3-20A0A0C4DH32 117 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 IGHV3-38A0A0C4DH36 116 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 SAGE2PA6NJ88 616 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 ZNF732B4DXR9 585 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 M0R3G1 203 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 OR7A17O14581 309 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 TNFSF12O43508 249 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 HUS1O60921 280 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 HSBP1O75506 76 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 ZMPSTE24O75844 475 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 SCELO95171 688 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 TXNDC12O95881 172 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 RPS17P08708 135 aaKnown RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 OCM2P0CE71 109 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 MYL2P10916 166 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 ZNF7P17097 686 aaPredicted RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 PGAM1P18669 254 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 PMCHP20382 165 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 GATA2P23769 480 aaPredicted RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 EDNRAP25101 427 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 KRTAP5-9P26371 169 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 TEAD1P28347 426 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 SRD5A2P31213 254 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 ACVR1BP36896 505 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 MATKP42679 507 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 CAPZBP47756 277 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 ALDH3B2P48448 385 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 NPY2RP49146 381 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 RGS6P49758 472 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 RPL14P50914 215 aaKnown RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 NOVA1P51513 510 aaKnown RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 CXCR4P61073 352 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 CNTN1Q12860 1018 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 MADCAM1Q13477 382 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 NAB1Q13506 487 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 CHI3L2Q15782 390 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 GGTA1PQ4G0N0 100 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 YIF1BQ5BJH7 314 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 TCTEX1D4Q5JR98 221 aa3.94□□□□□ -1.78
SMAD4-216ENST00000593223 BEND6Q5SZJ8 279 aaPredicted RBP3.94□□□□□ -1.78
SMAD4-216ENST00000593223 BEND3Q5T5X7 828 aa3.94□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms