RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ASB17Q8WXJ9 295 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 SGCDQ92629 289 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ZNF416Q9BWM5 594 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 EMC7Q9NPA0 242 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ERVK13-1Q9NX77 482 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 COQ3Q9NZJ6 369 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 CYB5R1Q9UHQ9 305 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 ERGIC3Q9Y282 383 aa9.43□□□□□ -0.9
SS18-213ENST00000579640 TRIM64CA6NLI5 447 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 A8MXE2 369 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 C1QL1O75973 258 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 PRB1P04280 392 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 GNLYP22749 145 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 CHRNB4P30926 498 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 CAPZA2P47755 286 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 CDH15P55291 814 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ACTA2P62736 377 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ACTG2P63267 376 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 EGR3Q06889 387 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 PIGFQ07326 219 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ENDOGQ14249 297 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 GALEQ14376 348 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 IRF3Q14653 427 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 TBCEQ15813 527 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 IGFBP7Q16270 282 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 SLC25A35Q3KQZ1 300 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 C1QTNF12Q5T7M4 302 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 OR7E24Q6IFN5 339 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 KLHL24Q6TFL4 600 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 NCCRP1Q6ZVX7 275 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 SLC16A14Q7RTX9 510 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ZSCAN2Q7Z7L9 614 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 FJX1Q86VR8 437 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 SPARTQ8N0X7 666 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ZNF433Q8N7K0 673 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 PRR7Q8TB68 274 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 NANOS1Q8WY41 292 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 MRPS26Q9BYN8 205 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 C1orf198Q9H425 327 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 VCX3AQ9NNX9 186 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ELOVL5Q9NYP7 299 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 JKAMPQ9P055 326 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 A0A1W2PQL4 384 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 TMEM129A0AVI4 362 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 CIB4A0PJX0 185 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 EEF1E1-BLOC1S5C9J1V9 151 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 MYL12BO14950 172 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 EEF1E1O43324 174 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 LIMS3P0CW19 117 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 LIMS4P0CW20 117 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 FOXG1P55316 489 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 ZNF85Q03923 595 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 SCRN3Q0VDG4 424 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 EIF2B1Q14232 305 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 SLC36A2Q495M3 483 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 SFRP5Q5T4F7 317 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 C9orf135Q5VTT2 229 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 KCTD18Q6PI47 426 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 ZNF474Q6S9Z5 364 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 TMPRSS11AQ6ZMR5 421 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 RHOUQ7L0Q8 258 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 LHFPL3Q86UP9 236 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 C17orf78Q8N4C9 275 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 KLHL36Q8N4N3 616 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 GJC3Q8NFK1 279 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 OR52N1Q8NH53 320 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 FCGR1BQ92637 280 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 BCL2L2Q92843 193 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 TBX5Q99593 518 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 USB1Q9BQ65 265 aaKnown RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 ZNF649Q9BS31 505 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ALG8Q9BVK2 526 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 MND1Q9BWT6 205 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 HDHD5Q9BXW7 423 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 GALNT8Q9NY28 637 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ASH2LQ9UBL3 628 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 SCOCQ9UIL1 159 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 ERRFI1Q9UJM3 462 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 GDF2Q9UK05 429 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 COPS3Q9UNS2 423 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 CAB39Q9Y376 341 aaPredicted RBP9.42□□□□□ -0.9
SS18-213ENST00000579640 LHFPL6Q9Y693 200 aa9.42□□□□□ -0.9
SS18-213ENST00000579640 LRRTM2O43300 516 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SEC14L2O76054 403 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 UBL3O95164 117 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ADRA2AP08913 450 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 SMIM18P0DKX4 95 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 PSMB1P20618 241 aaKnown RBP9.41□□□□□ -0.9
SS18-213ENST00000579640 ETV1P50549 477 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 HCCSP53701 268 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 HIST1H3AP68431 136 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ADORA2A-AS1P86434 159 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ESPL1Q14674 2120 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 GABRA6Q16445 453 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 TBRG1Q3YBR2 411 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 CDONQ4KMG0 1287 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 HIST2H3PS2Q5TEC6 136 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 DEGS2Q6QHC5 323 aa9.41□□□□□ -0.9
SS18-213ENST00000579640 ZNF322Q6U7Q0 402 aaPredicted RBP9.41□□□□□ -0.9
SS18-213ENST00000579640 PLEKHG7Q6ZR37 379 aa9.41□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms