RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 ZNF684Q5T5D7 378 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 HIST2H3PS2Q5TEC6 136 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 OTPQ5XKR4 325 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 SLC18B1Q6NT16 456 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 ZNF813Q6ZN06 617 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 HIST2H3AQ71DI3 136 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 SSX6Q7RTT6 188 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 MRGPRGQ86SM5 289 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 SYT9Q86SS6 491 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 SLC22A24Q8N4F4 322 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 RFLNBQ8N5W9 214 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 NANOGP1Q8N7R0 232 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 ZNF610Q8N9Z0 462 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 ZNF485Q8NCK3 441 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 C1orf162Q8NEQ5 155 aaPredicted RBP14.16□□□□□ -0.14
SS18-211ENST00000578954 OR1K1Q8NGR3 316 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 OR52N1Q8NH53 320 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 ST7LQ8TDW4 575 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 SMAP2Q8WU79 429 aaPredicted RBP14.16□□□□□ -0.14
SS18-211ENST00000578954 ASB17Q8WXJ9 295 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 ZNF416Q9BWM5 594 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 CCDC90BQ9GZT6 254 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 OPN3Q9H1Y3 402 aaPredicted RBP14.16□□□□□ -0.14
SS18-211ENST00000578954 ACOT13Q9NPJ3 140 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 CLEC2DQ9UHP7 191 aa14.16□□□□□ -0.14
SS18-211ENST00000578954 LSM2Q9Y333 95 aaKnown RBP14.16□□□□□ -0.14
SS18-211ENST00000578954 CAB39Q9Y376 341 aaPredicted RBP14.16□□□□□ -0.14
SS18-211ENST00000578954 ESPL1Q14674 2120 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 CFAP46Q8IYW2 2715 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 DAPL1A0PJW8 107 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 CCL21O00585 134 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 DVL2O14641 736 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 PTHP01270 115 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 JUNBP17275 347 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 RPS27P42677 84 aaKnown RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 HCCSP53701 268 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ROM1Q03395 351 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 AQP6Q13520 282 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 UBE2UQ5VVX9 321 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 XAF1Q6GPH4 301 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ANKRD16Q6P6B7 361 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ZNF474Q6S9Z5 364 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 KLHL24Q6TFL4 600 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 RHOUQ7L0Q8 258 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 LHFPL3Q86UP9 236 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 SYS1Q8N2H4 156 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ZNF433Q8N7K0 673 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 RELL2Q8NC24 303 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 FCGR1BQ92637 280 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 HTRA1Q92743 480 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 BCL2L2Q92843 193 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 MYCBPQ99417 103 aaPredicted RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 TBX5Q99593 518 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ABHD6Q9BV23 337 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ALG8Q9BVK2 526 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 MND1Q9BWT6 205 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 CHCHD3Q9NX63 227 aaKnown RBP14.15□□□□□ -0.14
SS18-211ENST00000578954 SCOCQ9UIL1 159 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 LAMP5Q9UJQ1 280 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 ERGIC3Q9Y282 383 aa14.15□□□□□ -0.14
SS18-211ENST00000578954 A0A1B0GUH1 482 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 A8MXE2 369 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 PRR32B1ATL7 298 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 SEC14L2O76054 403 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 FARS2O95363 451 aaKnown RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 HOXB1P14653 301 aaPredicted RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 ATP6V1B1P15313 513 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 MAP2K4P45985 399 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ACTA2P62736 377 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ACTG2P63267 376 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 TGFBR3Q03167 851 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 EGR3Q06889 387 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ZNF322Q6U7Q0 402 aaPredicted RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 KCTD8Q6ZWB6 473 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 DPPA2Q7Z7J5 298 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ZSCAN2Q7Z7L9 614 aaPredicted RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 LIX1LQ8IVB5 337 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 LINC00346Q8IVM7 164 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 SKA3Q8IX90 412 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 KLHL36Q8N4N3 616 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 OR52N5Q8NH56 324 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 RNF133Q8WVZ7 376 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 FBXO17Q96EF6 278 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 MRPL48Q96GC5 212 aaKnown RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 MAP6Q96JE9 813 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 OR8B4Q96RC9 309 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 AMELYQ99218 206 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 CDADC1Q9BWV3 514 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 C1orf198Q9H425 327 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ZNF224Q9NZL3 707 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 ASH2LQ9UBL3 628 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 GDF2Q9UK05 429 aaPredicted RBP14.14□□□□□ -0.15
SS18-211ENST00000578954 POLR1DQ9Y2S0 133 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 MYO7BQ6PIF6 2116 aa14.14□□□□□ -0.15
SS18-211ENST00000578954 EIF4E1BA6NMX2 242 aaKnown RBP14.13□□□□□ -0.15
SS18-211ENST00000578954 MYL12BO14950 172 aa14.13□□□□□ -0.15
SS18-211ENST00000578954 SULT1C4O75897 302 aa14.13□□□□□ -0.15
SS18-211ENST00000578954 ABHD16AO95870 558 aa14.13□□□□□ -0.15
SS18-211ENST00000578954 CLPTM1O96005 669 aa14.13□□□□□ -0.15
SS18-211ENST00000578954 PRB1P04280 392 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms