RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 TNFRSF1AP19438 455 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 AHCYP23526 432 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 PROK1P58294 105 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 BTG1P62324 171 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 HSF2Q03933 536 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 SPATA46Q5T0L3 261 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 THEM4Q5T1C6 240 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 KPRPQ5T749 579 aaPredicted RBP9.3□□□□□ -0.92
VPS53-207ENST00000570510 SAMD5Q5TGI4 173 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 NANOGP8Q6NSW7 305 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 CGB2Q6NT52 195 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 ZNF836Q6ZNA1 936 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 Q6ZTK2 550 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 SLC16A14Q7RTX9 510 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 DPPA2Q7Z7J5 298 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 LRRC28Q86X40 367 aaPredicted RBP9.3□□□□□ -0.92
VPS53-207ENST00000570510 MUC20Q8N307 709 aaPredicted RBP9.3□□□□□ -0.92
VPS53-207ENST00000570510 C10orf53Q8N6V4 93 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 RAB40AQ8WXH6 277 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 SH3GL3Q99963 347 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 PTDSS2Q9BVG9 487 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 ASPNQ9BXN1 380 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 KCNN2Q9H2S1 579 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 TMEM106BQ9NUM4 274 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 NECAP2Q9NVZ3 263 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 SLC13A4Q9UKG4 626 aa9.3□□□□□ -0.92
VPS53-207ENST00000570510 LOC102725191A0A1B0GVB3 256 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 GPR137BO60478 399 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 SNX3O60493 162 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 MFN2O95140 757 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 IGF2P01344 180 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 MELTFP08582 738 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 RPS2P15880 293 aaKnown RBP9.29□□□□□ -0.92
VPS53-207ENST00000570510 MDH2P40926 338 aaKnown RBP9.29□□□□□ -0.92
VPS53-207ENST00000570510 CYP51A1Q16850 503 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 SPATS1Q496A3 300 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 ULK3Q6PHR2 472 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 RANBP3LQ86VV4 465 aaPredicted RBP9.29□□□□□ -0.92
VPS53-207ENST00000570510 CALHM3Q86XJ0 350 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 VRK2Q86Y07 508 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 ARMC8Q8IUR7 673 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 SCAIQ8N9R8 606 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 RBM15BQ8NDT2 890 aaKnown RBP9.29□□□□□ -0.92
VPS53-207ENST00000570510 TAAR8Q969N4 342 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 ECSITQ9BQ95 431 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 PCDHAC1Q9H158 963 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 PRDM13Q9H4Q3 707 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 EFCAB1Q9HAE3 211 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 SELENONQ9NZV5 590 aa9.29□□□□□ -0.92
VPS53-207ENST00000570510 CGGBP1Q9UFW8 167 aaPredicted RBP9.29□□□□□ -0.92
VPS53-207ENST00000570510 RYR3Q15413 4870 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 TRAV36DV7A0A075B6V5 113 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 IGHV2-70DA0A0C4DH43 119 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 ZSCAN5BA6NJL1 495 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 FBP2O00757 339 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 MRASO14807 208 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 DHHO43323 396 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 NUDT7P0C024 238 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 PRG2P13727 222 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 HLA-DOBP13765 273 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 GZMMP51124 257 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 MMP15P51511 669 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 EGR4Q05215 589 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 ZMYND11Q15326 602 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 VMACQ2NL98 169 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 ZNF613Q6PF04 617 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 GDPGP1Q6ZNW5 385 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 CPLX4Q7Z7G2 160 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 PTOV1Q86YD1 416 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 CLIP4Q8N3C7 705 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 ADPRHL1Q8NDY3 354 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 NFKBIDQ8NI38 313 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 FGFBP3Q8TAT2 258 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 IPCEF1Q8WWN9 437 aaPredicted RBP9.28□□□□□ -0.92
VPS53-207ENST00000570510 MAL2Q969L2 176 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 TXNDC15Q96J42 360 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 EPYCQ99645 322 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 PCGF1Q9BSM1 259 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 IKZF5Q9H5V7 419 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 TMEM27Q9HBJ8 222 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 MSL2Q9HCI7 577 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 DCAF16Q9NXF7 216 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 BAG5Q9UL15 447 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 PPP1R3CQ9UQK1 317 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 CHST2Q9Y4C5 530 aa9.28□□□□□ -0.92
VPS53-207ENST00000570510 A0A087WUJ7 227 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 BTBD17A6NE02 478 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 MS4A18H0YCH9 400 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 FXYD1O00168 92 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 SURF4O15260 269 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 XPNPEP2O43895 674 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 TIMM8AO60220 97 aaPredicted RBP9.27□□□□□ -0.93
VPS53-207ENST00000570510 OR6A2O95222 327 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 C1QCP02747 245 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 THRBP10828 461 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 MPV17P39210 176 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 MNAT1P51948 309 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 BIDP55957 195 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 FGF12P61328 243 aa9.27□□□□□ -0.93
VPS53-207ENST00000570510 NCALDP61601 193 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms