RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, humanhuman

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-222ENST00000568232 IL19Q9UHD0 177 aa9.73□□□□□ -0.85
CLK3-222ENST00000568232 NOTCH3Q9UM47 2321 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 ZNF879B4DU55 563 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 P2RY10O00398 339 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 ENSAO43768 121 aaKnown RBP9.72□□□□□ -0.85
CLK3-222ENST00000568232 XPNPEP2O43895 674 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 PPP1R3DO95685 299 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 KRT4P19013 534 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 CDAP32320 146 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 CRATP43155 626 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 TXNL4AP83876 142 aaKnown RBP9.72□□□□□ -0.85
CLK3-222ENST00000568232 PSG4Q00888 419 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 NSUN5P1Q3KNT7 163 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 LSMEM1Q8N8F7 131 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 SCCPDHQ8NBX0 429 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 OR5J2Q8NH18 312 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 DNAJA4Q8WW22 397 aaPredicted RBP9.72□□□□□ -0.85
CLK3-222ENST00000568232 CFHR4Q92496 578 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 EPYCQ99645 322 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 RHOXF2Q9BQY4 288 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 SEMA6AQ9H2E6 1030 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 CCNB1IP1Q9NPC3 277 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 A4GALTQ9NPC4 353 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 TAS2R5Q9NYW4 299 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 KIF17Q9P2E2 1029 aa9.72□□□□□ -0.85
CLK3-222ENST00000568232 TENM2Q9NT68 2774 aa9.71□□□□□ -0.85
CLK3-222ENST00000568232 SACSQ9NZJ4 4579 aa9.71□□□□□ -0.85
CLK3-222ENST00000568232 A0A0G2JPF8 293 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 HNRNPCL2B2RXH8 293 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 HNRNPCL3B7ZW38 293 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 E9PBE3 544 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 HNRNPCL1O60812 293 aaKnown RBP9.71□□□□□ -0.86
CLK3-222ENST00000568232 SHOX2O60902 331 aaPredicted RBP9.71□□□□□ -0.86
CLK3-222ENST00000568232 OR6A2O95222 327 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 HNRNPCL4P0DMR1 293 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 CPT2P23786 658 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 TGFBR2P37173 567 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 ERFP50548 548 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 DSTNP60981 165 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 ERVK-25P63136 954 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 COL10A1Q03692 680 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 ZNF404Q494X3 552 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 NRN1LQ496H8 165 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 CEP85LQ5SZL2 805 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 ULK3Q6PHR2 472 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 UNQ6126/PRO20091Q6UXV3 157 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 C1orf122Q6ZSJ8 110 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 TRMT10CQ7L0Y3 403 aaKnown RBP9.71□□□□□ -0.86
CLK3-222ENST00000568232 NLRC3Q7RTR2 1065 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 C19orf18Q8NEA5 215 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 LRTOMTQ8WZ04 291 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 C4orf45Q96LM5 186 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 WDFY2Q96P53 400 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 MMP28Q9H239 520 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 CACYBPQ9HB71 228 aaKnown RBP9.71□□□□□ -0.86
CLK3-222ENST00000568232 FBLN5Q9UBX5 448 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 VPREB3Q9UKI3 123 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 IFT52Q9Y366 437 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 USH1CQ9Y6N9 552 aa9.71□□□□□ -0.86
CLK3-222ENST00000568232 SMIM23A6NLE4 172 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 H3BSA7 217 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 RNF13O43567 381 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 KRT75O95678 551 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 SLC6A2P23975 617 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 IL12AP29459 219 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 GABRA5P31644 462 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 ZNF84P51523 738 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 CLRN1P58418 232 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 UFM1P61960 85 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 HOXA4Q00056 320 aaPredicted RBP9.7□□□□□ -0.86
CLK3-222ENST00000568232 CD69Q07108 199 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 COX10Q12887 443 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 TAF11Q15544 211 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 HIST3H3Q16695 136 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 PDCD4Q53EL6 469 aaKnown RBP9.7□□□□□ -0.86
CLK3-222ENST00000568232 ZER1Q7Z7L7 766 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 ATG16L2Q8NAA4 619 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 OR10AD1Q8NGE0 317 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 NABP1Q96AH0 204 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 CMBLQ96DG6 245 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 OR52E6Q96RD3 313 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 ZNF607Q96SK3 696 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 WFDC6Q9BQY6 131 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 SIRPDQ9H106 197 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 WNT5BQ9H1J7 359 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 KCNN2Q9H2S1 579 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 PPA2Q9H2U2 334 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 SIAEQ9HAT2 523 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 MAN2C1Q9NTJ4 1040 aa9.7□□□□□ -0.86
CLK3-222ENST00000568232 IGKV1D-43A0A0B4J1Z2 117 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 A0A0B4J2E0 115 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 A0A1B0GX12 115 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 WI2-2373I1.2A0A1W2PRP0 233 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 ANKRD61A6NGH8 418 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 PHYHO14832 338 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 SURF4O15260 269 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 TPST1O60507 370 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 TPST2O60704 377 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 SLC2A10O95528 541 aa9.69□□□□□ -0.86
CLK3-222ENST00000568232 IGHG1P01857 330 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms