RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 ZBTB8AQ96BR9 441 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 ACACAQ13085 2346 aa13.59□□□□□ -0.23
CUX1-214ENST00000550008 ALKAL2Q6UX46 152 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 STAC2Q6ZMT1 411 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 WDR88Q6ZMY6 472 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 RADILQ96JH8 1075 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 ADGRL4Q9HBW9 690 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 PCOLCE2Q9UKZ9 415 aa13.58□□□□□ -0.23
CUX1-214ENST00000550008 MCTS1Q9ULC4 181 aaKnown RBP13.58□□□□□ -0.23
CUX1-214ENST00000550008 TMEM82A0PJX8 343 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 IMPA2O14732 288 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 ERGP11308 486 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 IL32P24001 234 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 BLVRBP30043 206 aaPredicted RBP13.58□□□□□ -0.24
CUX1-214ENST00000550008 DCTDP32321 178 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 APOBEC1P41238 236 aaKnown RBP13.58□□□□□ -0.24
CUX1-214ENST00000550008 ARHGDIBP52566 201 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 ZNF136P52737 540 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 CAPZA1P52907 286 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 PWWP2BQ6NUJ5 590 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 ZNF454Q8N9F8 522 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 VWCEQ96DN2 955 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 SLAMF6Q96DU3 332 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 C10orf90Q96M02 699 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 SLC19A3Q9BZV2 496 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 NXT1Q9UKK6 140 aaKnown RBP13.58□□□□□ -0.24
CUX1-214ENST00000550008 NUP50Q9UKX7 468 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 SIP14410 1827 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 CCDC163A0A0D9SF12 145 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 OIP5O43482 229 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 FASLGP48023 281 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 FAPQ12884 760 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 MEX3BQ6ZN04 569 aaKnown RBP13.58□□□□□ -0.24
CUX1-214ENST00000550008 MOB3CQ70IA8 216 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 RABEPKQ7Z6M1 372 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 ZNF679Q8IYX0 411 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 PHB2Q99623 299 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 PSD2Q9BQI7 771 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 BARHL1Q9BZE3 327 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 TXNIPQ9H3M7 391 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 PCDHB16Q9NRJ7 776 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 TMEM74BQ9NUR3 256 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 EHFQ9NZC4 300 aa13.58□□□□□ -0.24
CUX1-214ENST00000550008 PLEKHB1Q9UF11 243 aaPredicted RBP13.58□□□□□ -0.24
CUX1-214ENST00000550008 NUPL2O15504 423 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 MPZL1O95297 269 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 GUSBP08236 651 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 PLCXD3Q63HM9 321 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CD300LDQ6UXZ3 194 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 NPSR1Q6W5P4 371 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 RAB11FIP2Q7L804 512 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 FAM71CQ8NEG0 241 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 C20orf85Q9H1P6 137 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 ARRDC1-AS1Q9H2J1 176 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 ISYNA1Q9NPH2 558 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 SH3BGRL2Q9UJC5 107 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 LSM5Q9Y4Y9 91 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 ZSWIM8A7E2V4 1837 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 PATJQ8NI35 1801 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 PRAF2O60831 178 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CNOT4O95628 575 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 CCR9P51686 369 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 TAS2R20P59543 309 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 PMPCAQ10713 525 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 RBMS2Q15434 407 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 C5orf46Q6UWT4 87 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 ZNF813Q6ZN06 617 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 BEND4Q6ZU67 534 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 RAB3CQ96E17 227 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 THOC3Q96J01 351 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 C7orf50Q9BRJ6 194 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 PAPOLGQ9BWT3 736 aaKnown RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 ANKRD36A6QL64 1941 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 PATE3B3GLJ2 98 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CT45A8P0DMV1 189 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CT45A9P0DMV2 189 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 EDN3P14138 238 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CYB561P49447 251 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CT45A2Q5DJT8 189 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 GLIPR1L1Q6UWM5 242 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 ARSKQ6UWY0 536 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 DDOQ99489 341 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 UBE2J1Q9Y385 318 aaPredicted RBP13.57□□□□□ -0.24
CUX1-214ENST00000550008 TEX51A0A1B0GUA7 166 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 EFEMP2O95967 443 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 CADM4Q8NFZ8 388 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 DCUN1D4Q92564 292 aa13.57□□□□□ -0.24
CUX1-214ENST00000550008 H7C417 338 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 TNFSF14O43557 240 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 EBPQ15125 230 aaKnown RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 TSEN54Q7Z6J9 526 aaKnown RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 IL1F10Q8WWZ1 152 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 SGCZQ96LD1 299 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 BOKQ9UMX3 212 aaPredicted RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 LOC100289279A0A1B0GTE1 492 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 AIPO00170 330 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 IGKV1D-16P01601 117 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 ZNF35P13682 527 aa13.56□□□□□ -0.24
CUX1-214ENST00000550008 EIF1P41567 113 aaKnown RBP13.56□□□□□ -0.24
CUX1-214ENST00000550008 SLC17A1Q14916 467 aa13.56□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms