RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 PSG4Q00888 419 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 CD47Q08722 323 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 NPTX1Q15818 432 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 ENTPD8Q5MY95 495 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 GPR157Q5UAW9 335 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 FIP1L1Q6UN15 594 aaKnown RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 NLRC3Q7RTR2 1065 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 TMEM86BQ8N661 226 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 AKR7LQ8NHP1 331 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 RAB40AQ8WXH6 277 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 TAF15Q92804 592 aaKnown RBP eCLIP14.21□□□□□ -0.13
VPS29-204ENST00000548259 C4orf45Q96LM5 186 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 SEPHS2Q99611 448 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 RSPO3Q9BXY4 272 aaPredicted RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 CENPHQ9H3R5 247 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 INIPQ9NRY2 104 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 DCAF16Q9NXF7 216 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 MIOXQ9UGB7 285 aa14.21□□□□□ -0.13
VPS29-204ENST00000548259 NDRG4Q9ULP0 352 aaKnown RBP14.21□□□□□ -0.13
VPS29-204ENST00000548259 IGHV2-70DA0A0C4DH43 119 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 CEACAM18A8MTB9 384 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 M0R3H8 397 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ERLIN1O75477 346 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ABHD16AO95870 558 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 CDAP32320 146 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ERVK-25P63136 954 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 SRSF4Q08170 494 aaKnown RBP14.2□□□□□ -0.14
VPS29-204ENST00000548259 LRIF1Q5T3J3 769 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 FAM27BQ5VT28 67 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 SLC27A4Q6P1M0 643 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 JAZF1Q86VZ6 243 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 SMYD1Q8NB12 490 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 OR10S1Q8NGN2 331 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 FNDC8Q8TC99 324 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ADAMTS16Q8TE57 1224 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ASB10Q8WXI3 467 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 FAM71F1Q96KD3 344 aaPredicted RBP14.2□□□□□ -0.14
VPS29-204ENST00000548259 COG8Q96MW5 612 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 SLC7A7Q9UM01 511 aa14.2□□□□□ -0.14
VPS29-204ENST00000548259 ARHGAP32A7KAX9 2087 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 SLC2A10O95528 541 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 F13BP05160 661 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 WNT2P09544 360 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 PSG7Q13046 419 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 DEFB112Q30KQ8 113 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 ZNF620Q6ZNG0 422 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 PTOV1Q86YD1 416 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 NSMAFQ92636 917 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 RBP7Q96R05 134 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 RBM4BQ9BQ04 359 aaKnown RBP14.19□□□□□ -0.14
VPS29-204ENST00000548259 OR2H1Q9GZK4 316 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 PRDM13Q9H4Q3 707 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 TNFRSF19Q9NS68 423 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 SLC25A37Q9NYZ2 338 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 GMEB1Q9Y692 573 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 POMT1Q9Y6A1 747 aa14.19□□□□□ -0.14
VPS29-204ENST00000548259 PRKDCP78527 4128 aaKnown RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 LRRC30A6NM36 301 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 C12orf71A8MTZ7 269 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 TMEM178BH3BS89 294 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 SNNO75324 88 aaPredicted RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 CST2P09228 141 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 HOXB9P17482 250 aaPredicted RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 CD247P20963 164 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 UGT2B15P54855 530 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 RPL18Q07020 188 aaKnown RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 HLXQ14774 488 aaPredicted RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 TAF9Q16594 264 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 SPRNQ5BIV9 151 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 TMEM255AQ5JRV8 349 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 KLBQ86Z14 1044 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 ANKRD42Q8N9B4 389 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 C11orf65Q8NCR3 313 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 OR8B3Q8NGG8 313 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 OR6T1Q8NGN1 323 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 ITLN1Q8WWA0 313 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 NABP1Q96AH0 204 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 NEIL1Q96FI4 390 aaPredicted RBP14.18□□□□□ -0.14
VPS29-204ENST00000548259 OR8B2Q96RD0 313 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 WFDC6Q9BQY6 131 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 WNT5BQ9H1J7 359 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 TBCCD1Q9NVR7 557 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 C1RLQ9NZP8 487 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 RNF114Q9Y508 228 aa14.18□□□□□ -0.14
VPS29-204ENST00000548259 KIR2DS1A0A191URI9 304 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 MDFIC2A0A1B0GVS7 189 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 NPIPB13A6NJU9 1138 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 NPIPB4C9JG80 1138 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 ALX3O95076 343 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 GPX2P18283 190 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 FUT1P19526 365 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 KITLGP21583 273 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 VSNL1P62760 191 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 FBLN7Q53RD9 439 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 SYT9Q86SS6 491 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 CROCCP2Q86T23 111 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 C1orf87Q8N0U7 546 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 ATG16L2Q8NAA4 619 aa14.17□□□□□ -0.14
VPS29-204ENST00000548259 TBC1D15Q8TC07 691 aa14.17□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms