RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ACAD8Q9UKU7 415 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 MRPS28Q9Y2Q9 187 aaKnown RBP14.2□□□□□ -0.14
CUX1-211ENST00000546411 CCDC163A0A0D9SF12 145 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 CIB4A0PJX0 185 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 GAAP10253 952 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 FGL1Q08830 312 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 ZNF616Q08AN1 781 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 BCL2A1Q16548 175 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 MFSD8Q8NHS3 518 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PIGCQ92535 297 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 B9D1Q9UPM9 204 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 NBASA2RRP1 2371 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 IGHV3-15A0A0B4J1V0 119 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 BTG1P62324 171 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 GABREP78334 506 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 OR1J4Q8NGS1 313 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 NUDCD2Q8WVJ2 157 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 RAB3CQ96E17 227 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 MNTQ99583 582 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PCDHGA1Q9Y5H4 931 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 GGT3PA6NGU5 568 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PLA2G10O15496 165 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 PMP2P02689 132 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 ERGP11308 486 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 GLB1P16278 677 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 BLVRBP30043 206 aaPredicted RBP14.2□□□□□ -0.14
CUX1-211ENST00000546411 ZNF85Q03923 595 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 CD276Q5ZPR3 534 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 TMEM91Q6ZNR0 172 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 OR4K15Q8NH41 348 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 C10orf90Q96M02 699 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 SLC5A6Q9Y289 635 aa14.2□□□□□ -0.14
CUX1-211ENST00000546411 HEATR5BQ9P2D3 2071 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 MPZL1O95297 269 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 WNT1P04628 370 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 PI3P19957 117 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 CLDN6P56747 220 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 SLC26A5P58743 744 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 RNF4P78317 190 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 RFLNBQ8N5W9 214 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 VSTM2LQ96N03 204 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 SLC19A3Q9BZV2 496 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 EXOGQ9Y2C4 368 aaKnown RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 PIAS2O75928 621 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 S100A9P06702 114 aaKnown RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 LIMS1P48059 325 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 ARHGDIBP52566 201 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 MTCP1P56278 107 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 C3orf33Q6P1S2 294 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 MEX3BQ6ZN04 569 aaKnown RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 TMEM185AQ8NFB2 350 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 OR6M1Q8NGM8 313 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 ZFAND1Q8TCF1 268 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 TMEM74BQ9NUR3 256 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 H7C417 338 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 HSPB6O14558 160 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 TBX6O95947 436 aaPredicted RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 CDAP32320 146 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 RFX2P48378 723 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 GK2Q14410 553 aaPredicted RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 SLC17A1Q14916 467 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 ZNF764Q96H86 408 aaPredicted RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 ZNF845Q96IR2 970 aaPredicted RBP14.19□□□□□ -0.14
CUX1-211ENST00000546411 KCNK15Q9H427 330 aa14.19□□□□□ -0.14
CUX1-211ENST00000546411 IGHV1OR15-9A0A0B4J2B8 117 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 A6NLC8 198 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 APOC1P02654 83 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 TP53P04637 393 aaPredicted RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 TRAPPC2P0DI81 140 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 TRAPPC2BP0DI82 140 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 PTBP1P26599 531 aaKnown RBP eCLIP14.18□□□□□ -0.144e-11■■■■■ 42.8
CUX1-211ENST00000546411 FOXF1Q12946 379 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 ZNF585AQ6P3V2 769 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 GLIPR1L1Q6UWM5 242 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 ZC3HAV1Q7Z2W4 902 aaKnown RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 YRDCQ86U90 279 aaKnown RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 ZNF454Q8N9F8 522 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 SLAMF6Q96DU3 332 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 SLC22A11Q9NSA0 550 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 TCN2P20062 427 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 POU3F2P20265 443 aaPredicted RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 NPY4RP50391 375 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 LINC00303Q3SY05 128 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 UNQ6126/PRO20091Q6UXV3 157 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 LINC00696Q6ZRV3 163 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 MDGA2Q7Z553 956 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 SLC43A2Q8N370 569 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 B4GALT7Q9UBV7 327 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 ETV7Q9Y603 341 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 LANCL1O43813 399 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 OR7C1O76099 320 aaPredicted RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 QDPRP09417 244 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 HTR5AP47898 357 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 CAPZA1P52907 286 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 SEC61A1P61619 476 aaKnown RBP14.18□□□□□ -0.14
CUX1-211ENST00000546411 CREB3L2Q70SY1 520 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 ZNF611Q8N823 705 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 STOML3Q8TAV4 291 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 ZPLD1Q8TCW7 415 aa14.18□□□□□ -0.14
CUX1-211ENST00000546411 SMIM4Q8WVI0 70 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms