RNA–Protein interactions for RNA: ENST00000545663.5

CLSTN3-216, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 533 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-216ENST00000545663 TMEM178BH3BS89 294 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 RFXANKO14593 260 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 ANGPT2O15123 496 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 AKAP8O43823 692 aaKnown RBP12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 NPPAP01160 153 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 IGHV1-69P01742 117 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 ZCCHC18P0CG32 403 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 GRPRP30550 384 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 WNT5AP41221 380 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 COX20Q5RI15 118 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 UEVLDQ8IX04 471 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 KLHDC1Q8N7A1 406 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 OR4S1Q8NGB4 309 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 CMTM5Q96DZ9 223 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 TEX37Q96LM6 180 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 TRIM15Q9C019 465 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 SEMA6AQ9H2E6 1030 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 DPAGT1Q9H3H5 408 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 NDUFAF1Q9Y375 327 aa12.73□□□□□ -0.37
CLSTN3-216ENST00000545663 LOC102725191A0A1B0GVB3 256 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 AIM2O14862 343 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 ANP32DO95626 131 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 KRT75O95678 551 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 AGR2O95994 175 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 MMP9P14780 707 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 IL7RP16871 459 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PPIBP23284 216 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 IL12AP29459 219 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 EFNB2P52799 333 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 KLF10Q13118 480 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 H1FNTQ75WM6 255 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PIP4P2Q8N4L2 257 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PCYOX1LQ8NBM8 494 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 OR4A15Q8NGL6 344 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 OR9I1Q8NGQ6 314 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 OR1J2Q8NGS2 313 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 RP9Q8TA86 221 aaKnown RBP12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PPP1R35Q8TAP8 253 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 BCAS4Q8TDM0 211 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 LHX4Q969G2 390 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 NEIL1Q96FI4 390 aaPredicted RBP12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 SAMD8Q96LT4 415 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 TMEM246Q9BRR3 403 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PPA2Q9H2U2 334 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 RAD21L1Q9H4I0 556 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 CYSLTR2Q9NS75 346 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 VPREB3Q9UKI3 123 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 PPP1R3CQ9UQK1 317 aa12.72□□□□□ -0.37
CLSTN3-216ENST00000545663 P2RY10O00398 339 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 TOX4O94842 621 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 RPS4Y1P22090 263 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 PRDX6P30041 224 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 TGFBR2P37173 567 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 PITPNBP48739 271 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 COPZ1P61923 177 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 HPCAP84074 193 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 DMRTC1Q5HYR2 192 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 C6orf10Q5SRN2 563 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 MBNL2Q5VZF2 373 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 TMEM53Q6P2H8 277 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 LYPD2Q6UXB3 125 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 VRK2Q86Y07 508 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 FUNDC1Q8IVP5 155 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 GALNT4Q8N4A0 578 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 OR2Z1Q8NG97 314 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 OR4K5Q8NGD3 323 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 ITLN1Q8WWA0 313 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 PLEKHA8Q96JA3 519 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 LRMDAQ9H2I8 198 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 THUMPD1Q9NXG2 353 aaKnown RBP12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 MIOXQ9UGB7 285 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 CORO2BQ9UQ03 480 aa12.71□□□□□ -0.37
CLSTN3-216ENST00000545663 A0A096LPI6 279 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CDHR4A6H8M9 788 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 ANKRD61A6NGH8 418 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF726A6NNF4 738 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 HMGN4O00479 90 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 FZD7O75084 574 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 SERPINI2O75830 405 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CPSF4O95639 269 aaKnown RBP12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 SLC6A2P23975 617 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CHI3L1P36222 383 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 MNAT1P51948 309 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 HOXC5Q00444 222 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CYLC2Q14093 348 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 Q6ZR03 302 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 ZNF621Q6ZSS3 439 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 SNX32Q86XE0 403 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CLIP4Q8N3C7 705 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 DPP10Q8N608 796 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 SCCPDHQ8NBX0 429 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 LRTOMTQ8WZ04 291 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 SH3GL1Q99961 368 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 C1orf198Q9H425 327 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 CNTD2Q9H8S5 307 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 MTHFD2LQ9H903 347 aaPredicted RBP12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 TMEM38BQ9NVV0 291 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 GID8Q9NWU2 228 aa12.7□□□□□ -0.38
CLSTN3-216ENST00000545663 IQCMA0A1B0GVH7 501 aa12.69□□□□□ -0.38
CLSTN3-216ENST00000545663 ADARB2-AS1A8MUL3 147 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms