RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	PRSS58	Q8IYP2	241 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	C10orf53	Q8N6V4	93 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	SLC38A9	Q8NBW4	561 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	RNF166	Q96A37	237 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	SMIM19	Q96E16	107 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	NKX3-1	Q99801	234 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	OR10A4	Q9H209	315 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	NOX4	Q9NPH5	578 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	ST6GALNAC1	Q9NSC7	600 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	LAMP5	Q9UJQ1	280 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	CAMK2A	Q9UQM7	478 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	PRSS47	A8MTI9	375 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	NTN3	O00634	580 aa	Predicted RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	CTDSPL	O15194	276 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	SGCE	O43556	437 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	GALR2	O43603	387 aa	Predicted RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	PRAMEF2	O60811	474 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	EIF3G	O75821	320 aa	Known RBP eCLIP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ATG12	O94817	140 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	IFNG	P01579	166 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	IFI6	P09912	130 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	PVALB	P20472	110 aa	Predicted RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	LTB	Q06643	244 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ODF4	Q2M2E3	257 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	LEG1	Q6P5S2	330 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ZNF615	Q8N8J6	731 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	LGALS14	Q8TCE9	139 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	RGP1	Q92546	391 aa	Predicted RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	TSLP	Q969D9	159 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	OR1F2P	Q96R84	312 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ZNF251	Q9BRH9	671 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	MKKS	Q9NPJ1	570 aa	Predicted RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	INPP5E	Q9NRR6	644 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	PNO1	Q9NRX1	252 aa	Known RBP	13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	HAO2	Q9NYQ3	351 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ZNF318	Q5VUA4	2279 aa		13.52	□□□□□ -0.24
CHFR-223	ENST00000544268	ACAA1	P09110	424 aa	Predicted RBP	13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	ZNF883	P0CG24	379 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	SMIM6	P0DI80	62 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	RAD52	P43351	418 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	CCR9	P51686	369 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	RPS15	P62841	145 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	SERTAD2	Q14140	314 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	ELFN2	Q5R3F8	820 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	YOD1	Q5VVQ6	348 aa	Predicted RBP	13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	PWWP2B	Q6NUJ5	590 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	RHBDD1	Q8TEB9	315 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	NARS2	Q96I59	477 aa	Known RBP	13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	PDCD10	Q9BUL8	212 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	APMAP	Q9HDC9	416 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	OCIAD1	Q9NX40	245 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	TAS2R3	Q9NYW6	316 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	FBXL3	Q9UKT7	428 aa		13.52	□□□□□ -0.25
CHFR-223	ENST00000544268	NAP1L6	A6NFF2	107 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	TVP23A	A6NH52	213 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	DBX1	A6NMT0	343 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	GDF9	O60383	454 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	EIF1B	O60739	113 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	GDNF	P39905	211 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	EIF1	P41567	113 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	RBM34	P42696	430 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	EGR4	Q05215	589 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	PON3	Q15166	354 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	TMEM255A	Q5JRV8	349 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	C1QL3	Q5VWW1	255 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SLC25A25	Q6KCM7	469 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	RHBDD2	Q6NTF9	364 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	ZNF433	Q8N7K0	673 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	OR10K1	Q8NGX5	313 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	OR6K3	Q8NGY3	331 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	PHOSPHO1	Q8TCT1	267 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	GLYATL2	Q8WU03	294 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SMIM4	Q8WVI0	70 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	PNPLA2	Q96AD5	504 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	MESP1	Q9BRJ9	268 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	NXF5	Q9H1B4	397 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SRA1	Q9HD15	236 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SLC22A11	Q9NSA0	550 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	ZNF69	Q9UC07	566 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	RARRES3	Q9UL19	164 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SRPK3	Q9UPE1	567 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	SNRPGP15	A8MWD9	76 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	C17orf105	B2RV13	164 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	ARPC1B	O15143	372 aa	Known RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	OGG1	O15527	345 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	CREBL2	O60519	120 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	RNF224	P0DH78	156 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	OR8G3P	P0DMU2	310 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	MAPK3	P27361	379 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	TOMM34	Q15785	309 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	LINC01590	Q5TEZ4	76 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	COX15	Q7KZN9	410 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	DNAAF1	Q8NEP3	725 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	DMBX1	Q8NFW5	382 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	KTI12	Q96EK9	354 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	WDR89	Q96FK6	387 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	OR8D2	Q9GZM6	311 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	GPN1	Q9HCN4	374 aa	Predicted RBP	13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	HRASLS	Q9HDD0	168 aa		13.51	□□□□□ -0.25
CHFR-223	ENST00000544268	NRIP3	Q9NQ35	241 aa		13.51	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms