RNA–Protein interactions for RNA: ENST00000541770.1

CLSTN3-212, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 568 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-212ENST00000541770 OR1K1Q8NGR3 316 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 MCHR2Q969V1 340 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 FBXO17Q96EF6 278 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 ZNF837Q96EG3 531 aaPredicted RBP7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 ERMAPQ96PL5 475 aaPredicted RBP7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 RBP7Q96R05 134 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 FOXB1Q99853 325 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 IFT27Q9BW83 186 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 TSSK6Q9BXA6 273 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 SEMA6AQ9H2E6 1030 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 OCEL1Q9H607 264 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 OBP2BQ9NPH6 170 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 PAPOLBQ9NRJ5 636 aaKnown RBP7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 VSX1Q9NZR4 365 aaPredicted RBP7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 KIF17Q9P2E2 1029 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 AMDHD2Q9Y303 409 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 FKBP7Q9Y680 259 aa7.55□□□□□ -1.2
CLSTN3-212ENST00000541770 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ARPC4-TTLL3A0A0A6YYG9 625 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC22A23A1A5C7 686 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 H7C417 338 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SOCS2O14508 198 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SOX14O95416 240 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 PPP1R3DO95685 299 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 HIST1H1CP16403 213 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 PTAFRP25105 342 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 CD40P25942 277 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 NOS3P29474 1203 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 NR4A2P43354 598 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ZNF84P51523 738 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ESRRGP62508 458 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ARF1P84077 181 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 CD47Q08722 323 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC36A3Q495N2 470 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 CLEC12AQ5QGZ9 265 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 C9orf135Q5VTT2 229 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC25A47Q6Q0C1 308 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 PTCHD4Q6ZW05 846 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 PIP4P2Q8N4L2 257 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 WDR31Q8NA23 367 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SYT14Q8NB59 555 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ICA1LQ8NDH6 482 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 TEX47Q8TBZ9 253 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 BCL2L2Q92843 193 aaPredicted RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 RASD2Q96D21 266 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 VRK1Q99986 396 aaPredicted RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 RBM4BQ9BQ04 359 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 RBM4Q9BWF3 364 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 NELFAQ9H3P2 528 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 MOV10Q9HCE1 1003 aaKnown RBP7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC17A5Q9NRA2 495 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 KRT84Q9NSB2 600 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 TBC1D23Q9NUY8 699 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 ENOPH1Q9UHY7 261 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC25A15Q9Y619 301 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 CADP27708 2225 aa7.54□□□□□ -1.2
CLSTN3-212ENST00000541770 IGKV1D-43A0A0B4J1Z2 117 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 IGHV4-61A0A0C4DH41 118 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 SAC3D1A6NKF1 404 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 H3BN98 237 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 WNT11O96014 354 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 IGFBP1P08833 259 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CDH2P19022 906 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 NPR2P20594 1047 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CRABP1P29762 137 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 GRK5P34947 590 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CDKN2AP42771 156 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 GIPRP48546 466 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CRISP1P54107 249 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 ACTG1P63261 375 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 ELF3P78545 371 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 MRPS34P82930 218 aaKnown RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CDK5Q00535 292 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 MYBPC1Q00872 1141 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 TBRG1Q3YBR2 411 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 ZNF362Q5T0B9 420 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 ZNF544Q6NX49 715 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC27A4Q6P1M0 643 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 KLHL24Q6TFL4 600 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 ZNF813Q6ZN06 617 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 FOXL2NBQ6ZUU3 175 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 JAZF1Q86VZ6 243 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 C3orf56Q8N813 242 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 FAM169BQ8N8A8 192 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 NPEPL1Q8NDH3 523 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 OR4Q3Q8NH05 313 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 FOXN4Q96NZ1 517 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 DDOQ99489 341 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 CIB1Q99828 191 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 C9orf16Q9BUW7 83 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 SLC25A19Q9HC21 320 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 TMEM38BQ9NVV0 291 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 USE1Q9NZ43 259 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 TMEFF2Q9UIK5 374 aaPredicted RBP7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 KLHL21Q9UJP4 597 aa7.53□□□□□ -1.2
CLSTN3-212ENST00000541770 LRP5LA4QPB2 252 aa7.52□□□□□ -1.21
CLSTN3-212ENST00000541770 VWC2LB2RUY7 222 aa7.52□□□□□ -1.21
CLSTN3-212ENST00000541770 H7C1C5 153 aa7.52□□□□□ -1.21
CLSTN3-212ENST00000541770 NDUFS8O00217 210 aa7.52□□□□□ -1.21
CLSTN3-212ENST00000541770 KHDRBS3O75525 346 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms