RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 ZNF221Q9UK13 617 aa3.97□□□□□ -1.77
CD44-220ENST00000525688 CLEC4EQ9ULY5 219 aa3.97□□□□□ -1.77
CD44-220ENST00000525688 AP3M1Q9Y2T2 418 aa3.97□□□□□ -1.77
CD44-220ENST00000525688 NID2Q14112 1375 aa3.97□□□□□ -1.77
CD44-220ENST00000525688 BAZ2BQ9UIF8 2168 aaKnown RBP3.97□□□□□ -1.77
CD44-220ENST00000525688 LCTP09848 1927 aa3.97□□□□□ -1.77
CD44-220ENST00000525688 SZT2Q5T011 3432 aa3.96□□□□□ -1.77
CD44-220ENST00000525688 ADGRA3Q8IWK6 1321 aa3.96□□□□□ -1.77
CD44-220ENST00000525688 A0A1W2PR80 420 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 A0A1W2PRF3 423 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 A0A1W2PRM7 423 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 SAGE2PA6NJ88 616 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 C15orf61A6NNL5 157 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 SLC1A7O00341 560 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 CCSO14618 274 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 CASKO14936 926 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MSH4O15457 936 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 CFLARO15519 480 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 P2RX6O15547 441 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 EFNA2O43921 213 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 CEACAM4O75871 244 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 TOXO94900 526 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 FGGP02679 453 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 GSTA1P08263 222 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 KRT16P08779 473 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PET100P0DJ07 73 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 ATF6P18850 670 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 GPR1P46091 355 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PGFP49763 221 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 HLCSP50747 726 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 XKP51811 444 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 KPNA2P52292 529 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 PKNOX1P55347 436 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PAX9P55771 341 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 ERVS71-1P61550 626 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MGAT3Q09327 533 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 CNTN1Q12860 1018 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 HNRNPA0Q13151 305 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 KCTD19Q17RG1 926 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 SLC25A52Q3SY17 297 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 SLC36A2Q495M3 483 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 LRRC37A5PQ49AS3 106 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 C1orf220Q5T0J3 134 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 RUSC1-AS1Q66K80 236 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 ARMCX5Q6P1M9 558 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 ABHD13Q7L211 337 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 ITIH5Q86UX2 942 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 METTL4Q8N3J2 472 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 OR56A4Q8NGH8 313 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 OR4Q3Q8NH05 313 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 OR2L2Q8NH16 312 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MAPK15Q8TD08 544 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 SMAP2Q8WU79 429 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 TFGQ92734 400 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 CDS1Q92903 461 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PCED1BQ96HM7 432 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PACRGQ96M98 296 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 RNF145Q96MT1 663 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 FAM218AQ96MZ4 157 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MCCC1Q96RQ3 725 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 DCTN5Q9BTE1 182 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PAPOLGQ9BWT3 736 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 UCK2Q9BZX2 261 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 NXF5Q9H1B4 397 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 CXXC4Q9H2H0 198 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 FNDC4Q9H6D8 234 aaPredicted RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 C11orf49Q9H6J7 331 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 NIPAL2Q9H841 368 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 PLCXD1Q9NUJ7 323 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 DCAF13Q9NV06 445 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 RMND1Q9NWS8 449 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 NDE1Q9NXR1 346 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MRPL39Q9NYK5 338 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 PROCRQ9UNN8 238 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 SLC22A13Q9Y226 551 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 EIF3LQ9Y262 564 aaKnown RBP3.96□□□□□ -1.78
CD44-220ENST00000525688 V9GYY9 64 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 MCM3APO60318 1980 aa3.96□□□□□ -1.78
CD44-220ENST00000525688 LRRC37A2A6NM11 1700 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 FRMPD3Q5JV73 1810 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 CHD9Q3L8U1 2897 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 A0A0J9YVX5 310 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 hCG_38984A0A1B0GV85 526 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 IFITM10A6NMD0 228 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 LMO7DNF2Z398 122 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 GOSR2O14653 212 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 PRMT5O14744 637 aaPredicted RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 PSTPIP1O43586 416 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 IDH3BO43837 385 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 LYPLA2O95372 231 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 CA1P00915 261 aaPredicted RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 AMBPP02760 352 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 MMP1P03956 469 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 KLK1P06870 262 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 SP1P08047 785 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 SNRPAP09012 282 aaKnown RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 OCM2P0CE71 109 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 POLR2EP19388 210 aaKnown RBP3.95□□□□□ -1.78
CD44-220ENST00000525688 EDNRAP25101 427 aa3.95□□□□□ -1.78
CD44-220ENST00000525688 COILP38432 576 aaPredicted RBP3.95□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms