RNA–Protein interactions for RNA: ENST00000516428.1

RNU4-54P-201, Transcript of RNA, U4 small nuclear 54, pseudogene, humanhuman

BASIC

Gene RNU4-54P, Length 129 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-54P-201ENST00000516428 DLG1Q12959 904 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BNIP2Q12982 314 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ECH1Q13011 328 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF154Q13106 437 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 GPR17Q13304 367 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MADCAM1Q13477 382 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NAB1Q13506 487 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ASAH1Q13510 395 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TPBGQ13641 420 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DPYSL3Q14195 570 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FLOT2Q14254 428 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 KCNJ11Q14654 390 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM187Q14656 261 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CLINT1Q14677 625 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MTF1Q14872 753 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MAD2L1BPQ15013 274 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ABRAXAS2Q15018 415 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARL6IP1Q15041 203 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDK2Q15119 407 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PTGES3Q15185 160 aaKnown RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPA17Q15506 151 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ALX1Q15699 326 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM189A2Q15884 450 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZIC1Q15915 447 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZBTB6Q15916 424 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PSMD5Q16401 504 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 GABRA6Q16445 453 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TAL2Q16559 108 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NRF1Q16656 503 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 KYAT1Q16773 422 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 GUK1Q16774 197 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 EXOC3L4Q17RC7 722 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ECSCRQ19T08 205 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RFX4Q33E94 735 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BSXQ3C1V8 233 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TTLL9Q3SXZ7 439 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM176BQ3YBM2 270 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PARP15Q460N3 678 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TIGITQ495A1 244 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACSM3Q53FZ2 586 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 UNC50Q53HI1 259 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMUG1Q53HV7 270 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTBL2Q562R1 376 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PDZD11Q5EBL8 140 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CARD16Q5EG05 197 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 VWA2Q5GFL6 755 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TECRLQ5HYJ1 363 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CT45A1Q5HYN5 189 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MS4A13Q5J8X5 152 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SOHLH1Q5JUK2 328 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SPIN3Q5JUX0 258 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACTL10Q5JWF8 245 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SIRPB2Q5JXA9 342 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PPM1LQ5SGD2 360 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM120AOSQ5T036 256 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MARCH8Q5T0T0 291 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DCAF12Q5T6F0 453 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LINC00242Q5T6M2 205 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 HHATQ5VTY9 493 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 UBE2UQ5VVX9 321 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SYPL2Q5VXT5 272 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 MEDAGQ5VYS4 303 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 BSPRYQ5W0U4 402 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LPCAT4Q643R3 524 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 WDR25Q64LD2 544 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DUPD1Q68J44 220 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 REP15Q6BDI9 236 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PVRIGQ6DKI7 326 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 OR52E8Q6IFG1 317 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ANKRD26P1Q6NSI1 321 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FAM45BPQ6NSW5 357 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NIPAL1Q6NVV3 410 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ARMCX5Q6P1M9 558 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TRIM40Q6P9F5 258 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ZNF790Q6PG37 636 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DNM1P34Q6PK57 102 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SLC25A47Q6Q0C1 308 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CD200R1LQ6Q8B3 271 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 C19orf48Q6RUI8 117 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRSS57Q6UWY2 283 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 DRAM2Q6UX65 266 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRN1Q6UXK5 716 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TFAP2EQ6VUC0 442 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NPSR1Q6W5P4 371 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 C3P1Q6ZMU1 363 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LIN28BQ6ZN17 250 aaKnown RBP eCLIP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 RTL4Q6ZR62 310 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 Q6ZSR3 168 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 CCDC121Q6ZUS5 278 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 FOXL2NBQ6ZUU3 175 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ACOT7LQ6ZUV0 252 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 NCCRP1Q6ZVX7 275 aaPredicted RBP0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 AHSA2Q719I0 299 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PRSS48Q7RTY5 328 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 SMIM15Q7Z3B0 74 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 PIP4P1Q86T03 277 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 TMEM150AQ86TG1 271 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 ISCA2Q86U28 154 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LRRTM1Q86UE6 522 aa0.48□□□□□ -2.33
RNU4-54P-201ENST00000516428 LHFPL3Q86UP9 236 aa0.48□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms