RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 WDR5BQ86VZ2 330 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM151BQ8IW70 566 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TCEAL8Q8IYN2 117 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 LGI3Q8N145 548 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ASB13Q8WXK3 278 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 AKIRIN1Q9H9L7 192 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR6C3Q9NZP0 311 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR1A2Q9Y585 309 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 MN1Q10571 1320 aaPredicted RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 K7EQM0 130 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 GASTP01350 101 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 PMP2P02689 132 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TNFSF4P23510 183 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TACR1P25103 407 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR10J1P30954 320 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SYPL1Q16563 259 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 MANEALQ5VSG8 457 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 TMEM268Q5VZI3 342 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 RPL7L1Q6DKI1 246 aaKnown RBP8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 LCN15Q6UWW0 184 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 ESPNLQ6ZVH7 1005 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC35G3Q8N808 338 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR6K3Q8NGY3 331 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 OR2AE1Q8NHA4 323 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 AMDHD1Q96NU7 426 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CHRDL1Q9BU40 450 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 RSRP1Q9BUV0 290 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 CLMPQ9H6B4 373 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 SLC22A7Q9Y694 548 aa8.04□□□□□ -1.12
LIMCH1-218ENST00000513024 GAGE10A6NGK3 116 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 IGLON5A6NGN9 336 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 VSTM2BA6NLU5 285 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 F5H5K5 113 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ITGB8P26012 769 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 SHC1P29353 583 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 UBE2G1P62253 170 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 LIPNQ5VXI9 398 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 SAXO2Q658L1 398 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 MAVSQ7Z434 540 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 PDLIM7Q9NR12 457 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 INIPQ9NRY2 104 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 OBP2AQ9NY56 170 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TAS2R5Q9NYW4 299 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF256Q9Y2P7 627 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ETV7Q9Y603 341 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TNRC6CQ9HCJ0 1690 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TRBV4-1A0A0J9YWV2 114 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 GFRA2O00451 464 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A6P0DMU7 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A5P0DMU8 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A7P0DMV0 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A8P0DMV1 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A9P0DMV2 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 GABRR1P24046 479 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ECI1P42126 302 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 FHITP49789 147 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 GNG10P50151 68 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 PRPS1P60891 318 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 HBA1P69905 142 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 PGGHGQ32M88 737 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A2Q5DJT8 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF542PQ5EBM4 170 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A1Q5HYN5 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TRNP1Q6NT89 227 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 RSPO2Q6UXX9 243 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 HSD17B13Q7Z5P4 300 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CT45A3Q8NHU0 189 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 M1APQ8TC57 530 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 OIT3Q8WWZ8 545 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 KIRREL1Q96J84 757 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 C1QTNF2Q9BXJ5 285 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 OR51M1Q9H341 326 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 NHSQ6T4R5 1651 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 SNRPGP15A8MWD9 76 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TGM5O43548 720 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 RPS15AP62244 130 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 MZT1Q08AG7 82 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 PJVKQ0ZLH3 352 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CATR1Q13166 79 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 RAET1LQ5VY80 246 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 STUMQ69YW2 141 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 MEPCEQ7L2J0 689 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CHST14Q8NCH0 376 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 MDGA1Q8NFP4 955 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 CASD1Q96PB1 797 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 MED20Q9H944 212 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 NRIP3Q9NQ35 241 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 FKBP11Q9NYL4 201 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ATAD5Q96QE3 1844 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 TRDV1A0A1B0GX56 115 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 E5RGE8 158 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 STAG3L3P0CL85 134 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ZNF43P17038 809 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 FCGR2CP31995 323 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 ELLP55199 621 aaPredicted RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 SMAD2Q15796 467 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 DEFB110Q30KQ9 67 aa8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 BCDIN3DQ7Z5W3 292 aaKnown RBP8.03□□□□□ -1.12
LIMCH1-218ENST00000513024 LMNTD1Q8N9Z9 388 aa8.03□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms