RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 ZBTB37Q5TC79 503 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 FAM69BQ5VUD6 431 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 FAM166AQ6J272 317 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 LCN10Q6JVE6 187 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 C5orf46Q6UWT4 87 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 GLDNQ6ZMI3 551 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 H1FNTQ75WM6 255 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 OR51A2Q8NGJ7 313 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 MFSD8Q8NHS3 518 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ST8SIA1Q92185 356 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 GAL3ST1Q99999 423 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 WDR77Q9BQA1 342 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 EMC6Q9BV81 110 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 HEXA-AS1Q9H8Q6 139 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 DIABLOQ9NR28 239 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CA10Q9NS85 328 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 EIF3KQ9UBQ5 218 aaKnown RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF69Q9UC07 566 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 MTFP1Q9UDX5 166 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CGGBP1Q9UFW8 167 aaPredicted RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 CDV3Q9UKY7 258 aaKnown RBP8.01□□□□□ -1.13
SYNE1-217ENST00000466159 NPTNQ9Y639 398 aa8.01□□□□□ -1.13
SYNE1-217ENST00000466159 LOC100289279A0A1B0GTE1 492 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 LOC101059948A0A1B0GTJ6 334 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 PYCARD-AS1I3L0S3 204 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 LMX1BO60663 402 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 NDUFB6O95139 128 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 CFPP27918 469 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 PTGS2P35354 604 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 APOBEC1P41238 236 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 MAP2K6P52564 334 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 EMP2P54851 167 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 CCL7P80098 99 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 HSF1Q00613 529 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ACY1Q03154 408 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ZP4Q12836 540 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 INPP5JQ15735 1006 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 GLYATL3Q5SZD4 288 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 TEX261Q6UWH6 196 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF454Q8N9F8 522 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 OR52B4Q8NGK2 314 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 OR4C16Q8NGL9 310 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 NUBPLQ8TB37 319 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ST7LQ8TDW4 575 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 WDR89Q96FK6 387 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 SLC25A44Q96H78 314 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 KCNK17Q96T54 332 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ATG5Q9H1Y0 275 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 G6PC2Q9NQR9 355 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 PTTG3PQ9NZH4 202 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 KLRF1Q9NZS2 232 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 EMC3Q9P0I2 261 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 MYEF2Q9P2K5 600 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 ELF5Q9UKW6 265 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 MRPS18BQ9Y676 258 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 R4GMQ9 66 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 U3KQ87 197 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 LY6G6EA0A0G2JKS1 128 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 A0A1W2PPC1 479 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 DCDC2BA2VCK2 349 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 A6NIZ1 184 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 TNFRSF10AO00220 468 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 EIF1AYO14602 144 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 TOX3O15405 576 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 CD2P06729 351 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 TPOP07202 933 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 FOSL2P15408 326 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF81P51508 661 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 RAP1BP61224 184 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 RAP1AP62834 184 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 DCDP81605 110 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 CSRP2Q16527 193 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 SMUG1Q53HV7 270 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 CDH24Q86UP0 819 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 ZNF680Q8NEM1 530 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 THRSPQ92748 146 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 DVL3Q92997 716 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 SLC25A28Q96A46 364 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 CLDN23Q96B33 292 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 C5orf34Q96MH7 638 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 AKIRIN1Q9H9L7 192 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 APMAPQ9HDC9 416 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 CHST11Q9NPF2 352 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 PRMT8Q9NR22 394 aaPredicted RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 CENPMQ9NSP4 180 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 MGAT4CQ9UBM8 478 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 U3KQA8 63 aa8□□□□□ -1.13
SYNE1-217ENST00000466159 PHF3Q92576 2039 aaKnown RBP8□□□□□ -1.13
SYNE1-217ENST00000466159 IGHV5-10-1A0A0J9YXX1 117 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 TMEM269A0A1B0GVZ9 245 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 VSTM2BA6NLU5 285 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 TPPPO94811 219 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 VSIG10L2P0DP72 767 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 GTF2F2P13984 249 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 IGFBP3P17936 291 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 HTR2CP28335 458 aa7.99□□□□□ -1.13
SYNE1-217ENST00000466159 EIF1AXP47813 144 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DHPSP49366 369 aaPredicted RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 DAP3P51398 398 aaKnown RBP7.99□□□□□ -1.13
SYNE1-217ENST00000466159 FOXK1P85037 733 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms