RNA–Protein interactions for RNA: ENST00000444040.6

SHQ1-202, Transcript of SHQ1, H/ACA ribonucleoprotein assembly factor, humanhuman

TSL 2

Gene SHQ1, Length 2,844 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHQ1-202ENST00000444040 MFSD8Q8NHS3 518 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 ST7LQ8TDW4 575 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 THAP3Q8WTV1 239 aaPredicted RBP14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR2A7Q96R45 310 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 KCNK17Q96T54 332 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 R4GMQ9 66 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 IGKV1D-43A0A0B4J1Z2 117 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR2M5A3KFT3 312 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 GIPP09681 153 aaPredicted RBP14.34□□□□□ -0.11
SHQ1-202ENST00000444040 DHODHQ02127 395 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 EXOSC2Q13868 293 aaKnown RBP14.34□□□□□ -0.11
SHQ1-202ENST00000444040 TOMM20Q15388 145 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 SHBQ15464 509 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR7A5Q15622 319 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 ARSKQ6UWY0 536 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 UXS1Q8NBZ7 420 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 OR52B4Q8NGK2 314 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 CDCP1Q9H5V8 836 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 G6PC2Q9NQR9 355 aa14.34□□□□□ -0.11
SHQ1-202ENST00000444040 A6NIZ1 184 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 TMEM200CA6NKL6 621 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 CD2P06729 351 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 PRSS3P35030 304 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 APOBEC1P41238 236 aaKnown RBP14.33□□□□□ -0.11
SHQ1-202ENST00000444040 RAP1BP61224 184 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 RAP1AP62834 184 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 CAMK2BQ13554 666 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 CLPPQ16740 277 aaPredicted RBP14.33□□□□□ -0.11
SHQ1-202ENST00000444040 GLT8D1Q68CQ7 371 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 H1FNTQ75WM6 255 aaPredicted RBP14.33□□□□□ -0.11
SHQ1-202ENST00000444040 CLEC1AQ8NC01 280 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 NUBPLQ8TB37 319 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 GPX8Q8TED1 209 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 SLC25A44Q96H78 314 aaPredicted RBP14.33□□□□□ -0.11
SHQ1-202ENST00000444040 GINS4Q9BRT9 223 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 MED11Q9P086 117 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 EMC9Q9Y3B6 208 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 HRH3Q9Y5N1 445 aa14.33□□□□□ -0.11
SHQ1-202ENST00000444040 MRPS18BQ9Y676 258 aaKnown RBP14.33□□□□□ -0.11
SHQ1-202ENST00000444040 NPIPB13A6NJU9 1138 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 NPIPB4C9JG80 1138 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 TIAF1O95411 115 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 PSMA6P60900 246 aaKnown RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 TSPAN5P62079 268 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 MFSD13AQ14CX5 517 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 SMAD2Q15796 467 aaKnown RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 DCXRQ7Z4W1 244 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 RABEPKQ7Z6M1 372 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 SPEM1Q8N4L4 309 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 OR51A2Q8NGJ7 313 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 OR6N1Q8NGY5 312 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 ANGPTL6Q8NI99 470 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 RNF138Q8WVD3 245 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 WDR89Q96FK6 387 aaPredicted RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 RBP7Q96R05 134 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 CLEC4MQ9H2X3 399 aaPredicted RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 CKLFQ9UBR5 152 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 PPIEQ9UNP9 301 aaKnown RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 CEP192Q8TEP8 1941 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 RPS10-NUDT3A0A1W2PQS6 291 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 PLSCR5A0PG75 271 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 MEIS3P1A6NDR6 274 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 CFDP00746 253 aaPredicted RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 ISG15P05161 165 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 HTR2CP28335 458 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 SUMO3P55854 103 aaPredicted RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 GLYATL3Q5SZD4 288 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 TMEM71Q6P5X7 295 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 ELMOD2Q8IZ81 293 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 ATG5Q9H1Y0 275 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 ATXN7L1Q9ULK2 861 aaPredicted RBP14.33□□□□□ -0.12
SHQ1-202ENST00000444040 HHLA2Q9UM44 414 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 VDAC3Q9Y277 283 aa14.33□□□□□ -0.12
SHQ1-202ENST00000444040 NPIPA5E9PKD4 350 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 TOX3O15405 576 aaPredicted RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 AKAIN1P0CW23 69 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 GTF2F2P13984 249 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 FOSL2P15408 326 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 ZNF823P16415 610 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 ARRB1P49407 418 aaPredicted RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 DAP3P51398 398 aaKnown RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 SSBP1Q04837 148 aaKnown RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 GRK1Q15835 563 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 LINC00346Q8IVM7 164 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 SLC7A5P2Q9GIP4 190 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 MED29Q9NX70 200 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 OR52A1Q9UKL2 312 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 NPIPA1Q9UND3 350 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 A0A1W2PQ72 361 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 ETV2O00321 342 aaPredicted RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 ZNF208O43345 1280 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 DOK2O60496 412 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 AQP8O94778 261 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 CD3DP04234 171 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 RAP2BP61225 183 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 POU3F1Q03052 451 aaPredicted RBP14.32□□□□□ -0.12
SHQ1-202ENST00000444040 FOXF1Q12946 379 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 NKAIN1Q4KMZ8 207 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 DNM1P34Q6PK57 102 aa14.32□□□□□ -0.12
SHQ1-202ENST00000444040 LYPD6Q86Y78 171 aa14.32□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms