RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 RGPD1P0DJD0 1748 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 PPP5D1E7EU14 171 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 AKR7A3O95154 331 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 TRIM23P36406 574 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 PKMYT1Q99640 499 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 SCPEP1Q9HB40 452 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 GAR1Q9NY12 217 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 PPP1R3CQ9UQK1 317 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 RGPD2P0DJD1 1756 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM122BQ7Z309 247 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 IFI44Q8TCB0 444 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 ADAMTS5Q9UNA0 930 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 A0A087WZY1 265 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 ARPC3O15145 178 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 TMEM182Q6ZP80 229 aaPredicted RBP11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 RYDENQ9NUL5 291 aaKnown RBP11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 AK3Q9UIJ7 227 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 KPTNQ9Y664 436 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 TRABD2BA6NFA1 517 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 MBP02144 154 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF251Q9BRH9 671 aa11.73□□□□□ -0.53
CCDC88C-204ENST00000389857 AGFG1P52594 562 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 PRTGQ2VWP7 1150 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ARFGAP1Q8N6T3 406 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 SLC39A13Q96H72 371 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ANKRD10Q9NXR5 420 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 RNF150Q9ULK6 438 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 VAMP5O95183 116 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 CSNK1G2P78368 415 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF573Q86YE8 665 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM185AQ8N0U4 392 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 GNPNAT1Q96EK6 184 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ACTR3CQ9C0K3 210 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 GPR173Q9NS66 373 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 PROCRQ9UNN8 238 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 CYTIPO60759 359 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 DOC2BQ14184 412 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 TIGITQ495A1 244 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 RPL7L1Q6DKI1 246 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF534Q76KX8 674 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 BHLHE23Q8NDY6 225 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM117AQ9C073 453 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 M0QZ24 198 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ST8SIA3O43173 380 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 YIF1AO95070 293 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 FCRL6Q6DN72 434 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ABHD17CQ6PCB6 329 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 TRIB1Q96RU8 372 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 IER2Q9BTL4 223 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 CHRDL1Q9BU40 450 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 THAP10Q9P2Z0 257 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 RNF24Q9Y225 148 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 GALR2O43603 387 aaPredicted RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 JTBO76095 146 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 BMI1P35226 326 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 TM4SF4P48230 202 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 OR51H1Q8NH63 302 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 DLL4Q9NR61 685 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 STRAPQ9Y3F4 350 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 SLCO1B1Q9Y6L6 691 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 LGI1O95970 557 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 ZDHHC11BP0C7U3 371 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 MRPL19P49406 292 aaKnown RBP11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 TMEM64Q6YI46 380 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 OR51F2Q8NH61 342 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 TAAR6Q96RI8 345 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 NDRG3Q9UGV2 375 aa11.72□□□□□ -0.53
CCDC88C-204ENST00000389857 PRKRAO75569 313 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 LALBAP00709 142 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 CBR1P16152 277 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 EN2P19622 333 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 BTG1P62324 171 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 FER1L6Q2WGJ9 1857 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 S1PR3Q99500 378 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 JAM3Q9BX67 310 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 HES7Q9BYE0 225 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 C11orf54Q9H0W9 315 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 USP22Q9UPT9 525 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 KLF13Q9Y2Y9 288 aaPredicted RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 FAM166BA8MTA8 275 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 ZNF724A8MTY0 619 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 SMIM17P0DL12 118 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 FCER1GP30273 86 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 TAS2R4Q9NYW5 299 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 LKAAEAR1Q8TD35 194 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 C14orf79Q96F83 325 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 CLCF1Q9UBD9 225 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 OR6C68A6NDL8 312 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 TARM1B6A8C7 271 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 RAF1P04049 648 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 GLRA1P23415 457 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 PFN3P60673 137 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 ALKAL1Q6UXT8 129 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 OR5M1Q8NGP8 315 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 TSLPQ969D9 159 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 MRPS24Q96EL2 167 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 RNF32Q9H0A6 362 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 BANF2Q9H503 90 aa11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 ZMAT3Q9HA38 289 aaKnown RBP11.71□□□□□ -0.53
CCDC88C-204ENST00000389857 SIAEQ9HAT2 523 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms