RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 A0A1B0GUH1 482 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 H7C417 338 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 ALDOBP05062 364 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 HTR2BP41595 481 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 LYPD8Q6UX82 237 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 DCXRQ7Z4W1 244 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 PLPP7Q8NBV4 271 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 GPR137Q96N19 417 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 APMAPQ9HDC9 416 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 DLL4Q9NR61 685 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 MYOTQ9UBF9 498 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 MTFP1Q9UDX5 166 aa18.64■□□□□ 0.57
CCDC88B-203ENST00000359902 LOC100289279A0A1B0GTE1 492 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 CIB4A0PJX0 185 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 H3BML4 177 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 RBBP9O75884 186 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 IGFBP3P17936 291 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 PTGDSP41222 190 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 METTL11BQ5VVY1 283 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 LINC00346Q8IVM7 164 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 OR1J4Q8NGS1 313 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC25A28Q96A46 364 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 NKX3-1Q99801 234 aaPredicted RBP18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 POTEKPQ9BYX7 375 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 DIABLOQ9NR28 239 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 PPP4R1LQ9P1A2 415 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 NPTNQ9Y639 398 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 ICMTO60725 284 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 ZFAND5O76080 213 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 RAD52P43351 418 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 FAM69BQ5VUD6 431 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 ZNF767PQ75MW2 155 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 C5orf34Q96MH7 638 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 UTP23Q9BRU9 249 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 CRB3Q9BUF7 120 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 G6PC2Q9NQR9 355 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 TAS2R4Q9NYW5 299 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 CDV3Q9UKY7 258 aaKnown RBP18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 PCDHGA5Q9Y5G8 931 aa18.63■□□□□ 0.57
CCDC88B-203ENST00000359902 A0A1W2PPC1 479 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 OR2J2O76002 312 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 AQP8O94778 261 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 KDM4BO94953 1096 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 CD2P06729 351 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 MSX1P28360 303 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC25A53Q5H9E4 307 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 TMEM205Q6UW68 189 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 ZNF782Q6ZMW2 699 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 OR10G3Q8NGC4 313 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 ZNF436Q9C0F3 470 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 NPDC1Q9NQX5 325 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 CKLFQ9UBR5 152 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 B3GALT5Q9Y2C3 310 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 TRIOBPQ9H2D6 2365 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 ERVH48-1M5A8F1 160 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 NDUFB6O95139 128 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 CD37P11049 281 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SELENOPP49908 381 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 ZNF41P51814 821 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 HLA-BQ31612 363 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 PLPPR5Q32ZL2 321 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC25A25Q6KCM7 469 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 LRFN4Q6PJG9 635 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 GLDNQ6ZMI3 551 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 PPP1R3BQ86XI6 285 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 POC1BQ8TC44 478 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 MRGPRX4Q96LA9 322 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SEC22CQ9BRL7 303 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 AKIRIN1Q9H9L7 192 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 FANCFQ9NPI8 374 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 PRMT8Q9NR22 394 aaPredicted RBP18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC17A5Q9NRA2 495 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 ALKBH4Q9NXW9 302 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 SCP2D1Q9UJQ7 156 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 PI4KAP42356 2102 aa18.62■□□□□ 0.57
CCDC88B-203ENST00000359902 TRAV18A0A075B6X5 111 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 IGLV3-32A0A0A0MS00 114 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 TMEM272A0A1B0GTI8 110 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 DOK2O60496 412 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 FSTP19883 344 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 ARPC4P59998 168 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 CAMK2BQ13554 666 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 PCGF3Q3KNV8 242 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 GLT8D1Q68CQ7 371 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 NHLRC1Q6VVB1 395 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 SLC25A44Q96H78 314 aaPredicted RBP18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 EMC6Q9BV81 110 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 SERINC1Q9NRX5 453 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 OR52A1Q9UKL2 312 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 HHLA2Q9UM44 414 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 A0A1W2PQ72 361 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 TSC22D2O75157 780 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 ISG15P05161 165 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 GUCA2AQ02747 115 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 MYBPHQ13203 477 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 CORO6Q6QEF8 472 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 MED30Q96HR3 178 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 METTL7AQ9H8H3 244 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 B3GAT1Q9P2W7 334 aa18.61■□□□□ 0.57
CCDC88B-203ENST00000359902 HRGP04196 525 aa18.6■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms