RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 KRASP01116 189 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 INHBEP58166 350 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 ZNF836Q6ZNA1 936 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 MRPL21Q7Z2W9 205 aaKnown RBP11.62□□□□□ -0.55
COL6A3-203ENST00000353578 TMEM156Q8N614 296 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 TMEM229BQ8NBD8 167 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 NCBP2LA6PVI3 153 aaKnown RBP11.62□□□□□ -0.55
COL6A3-203ENST00000353578 FZD9O00144 591 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 QDPRP09417 244 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 CD82P27701 267 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 SP2Q02086 613 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 PMCHL1Q16048 86 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 EOGTQ5NDL2 527 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 VWA1Q6PCB0 445 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 FAM173AQ9BQD7 235 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 OR5K3A6NET4 321 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 GABRR1P24046 479 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 ZNF528Q3MIS6 628 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 ZIC5Q96T25 663 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 HIF1ANQ9NWT6 349 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 MAP1LC3B2A6NCE7 125 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 A6NL46 340 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 WDR1O75083 606 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 CPEB4Q17RY0 729 aaKnown RBP eCLIP11.62□□□□□ -0.55
COL6A3-203ENST00000353578 KIAA0895LQ68EN5 471 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 REC114Q7Z4M0 266 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 NMES1Q9C002 83 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 MAP1LC3BQ9GZQ8 125 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 BCAS3Q9H6U6 928 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 PRSS16Q9NQE7 514 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 RTCAO00442 366 aaKnown RBP11.62□□□□□ -0.55
COL6A3-203ENST00000353578 IL3RAP26951 378 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 TAS2R60P59551 318 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 TGFBR3Q03167 851 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 FAM109BQ6ICB4 259 aaPredicted RBP11.62□□□□□ -0.55
COL6A3-203ENST00000353578 SEC22AQ96IW7 307 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 C1QTNF3Q9BXJ4 246 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 GPR160Q9UJ42 338 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 CTSAP10619 480 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 FAHD1Q6P587 224 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 OR2T10Q8NGZ9 312 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 NUDT22Q9BRQ3 303 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 ELOVL3Q9HB03 270 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 GLYATL3Q5SZD4 288 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 OR5M11Q96RB7 305 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 HINT2Q9BX68 163 aa11.62□□□□□ -0.55
COL6A3-203ENST00000353578 MED12Q93074 2177 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 SUSD5O60279 629 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 SEMA7AO75326 666 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 YIF1AO95070 293 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ITGB7P26010 798 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 FCER1GP30273 86 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ENTPD8Q5MY95 495 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ZNF684Q5T5D7 378 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 TMEM204Q9BSN7 226 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 IGKV6D-41A0A0C4DH26 115 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ZAR1LA6NP61 321 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 CSNK1EP49674 416 aaKnown RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR2B11Q5JQS5 317 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ZNF776Q68DI1 518 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 TMEM182Q6ZP80 229 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 SIRT3Q9NTG7 399 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 PLCH1Q4KWH8 1693 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 TESK1Q15569 626 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 NAT8Q9UHE5 227 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 TGIF2-C20orf24A0A0A6YYL0 155 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 HBQ1P09105 142 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 CCNOP22674 350 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 NAAAQ02083 359 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 Q1RN00 199 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR5AU1Q8NGC0 362 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 BPIFA4PQ86YQ2 179 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 TRIB1Q96RU8 372 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 B3GAT1Q9P2W7 334 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR52A4PA6NMU1 304 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ZNF264O43296 627 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 KLK3P07288 261 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 GP1BAP07359 652 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 PPOXP50336 477 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 NKAIN1Q4KMZ8 207 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 PRICKLE2Q7Z3G6 844 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR5M9Q8NGP3 310 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ENTPD2Q9Y5L3 495 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 SOWAHBA6NEL2 793 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ANTXRLA6NF34 631 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 FIGNL2A6NMB9 653 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 F5H5K5 113 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 MT-ND6P03923 174 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 ELAVL3Q14576 367 aaKnown RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 SURF2Q15527 256 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 C9orf62Q8N4C0 152 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR2A1Q8NGT9 310 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR10J5Q8NHC4 309 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 DTD2Q96FN9 168 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 PDXPQ96GD0 296 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 OR5B2Q96R09 309 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 PMCHL2Q9BQD1 86 aa11.61□□□□□ -0.55
COL6A3-203ENST00000353578 FGF20Q9NP95 211 aaPredicted RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 MRPS28Q9Y2Q9 187 aaKnown RBP11.61□□□□□ -0.55
COL6A3-203ENST00000353578 RNGTTO60942 597 aaKnown RBP11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms