RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 C12orf10Q9HB07 376 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 ASIC5Q9NY37 505 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 MRPL39Q9NYK5 338 aaKnown RBP12.05□□□□□ -0.48
CLN3-249ENST00000636685 NOP53Q9NZM5 478 aaKnown RBP12.05□□□□□ -0.48
CLN3-249ENST00000636685 KIF17Q9P2E2 1029 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 SIGLEC9Q9Y336 463 aa12.05□□□□□ -0.48
CLN3-249ENST00000636685 IGHV1-69DA0A0B4J2H0 117 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 MGRN1O60291 552 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 PPP1R3DO95685 299 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 CYB5R3P00387 301 aaPredicted RBP12.04□□□□□ -0.48
CLN3-249ENST00000636685 IGHV1-69P01742 117 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 BCHEP06276 602 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 QDPRP09417 244 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 MMP9P14780 707 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 HTR2AP28223 471 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 CDKN2CP42773 168 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 PSG7Q13046 419 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 MAD2L1Q13257 205 aaPredicted RBP12.04□□□□□ -0.48
CLN3-249ENST00000636685 MELKQ14680 651 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 WDR25Q64LD2 544 aaPredicted RBP12.04□□□□□ -0.48
CLN3-249ENST00000636685 SLC35E4Q6ICL7 350 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 SLC35D2Q76EJ3 337 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 HOMEZQ8IX15 550 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 OR6X1Q8NH79 312 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 AKR7LQ8NHP1 331 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 ZNF420Q8TAQ5 688 aaPredicted RBP12.04□□□□□ -0.48
CLN3-249ENST00000636685 LRTOMTQ8WZ04 291 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 ZNF566Q969W8 418 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 CCDC115Q96NT0 180 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 OR2V2Q96R30 315 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 RHOXF2Q9BQY4 288 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 DPAGT1Q9H3H5 408 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 GCM1Q9NP62 436 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 CLN8Q9UBY8 286 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 ZNF232Q9UNY5 417 aa12.04□□□□□ -0.48
CLN3-249ENST00000636685 TOX4O94842 621 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 GDI2P50395 445 aaKnown RBP12.03□□□□□ -0.48
CLN3-249ENST00000636685 TXNL4AP83876 142 aaKnown RBP12.03□□□□□ -0.48
CLN3-249ENST00000636685 NRN1LQ496H8 165 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 ALG10BQ5I7T1 473 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 LYPD2Q6UXB3 125 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 ZNF572Q7Z3I7 529 aaPredicted RBP12.03□□□□□ -0.48
CLN3-249ENST00000636685 C10orf53Q8N6V4 93 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 SCCPDHQ8NBX0 429 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 OR6S1Q8NH40 331 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 C10orf82Q8WW14 230 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 CFHR4Q92496 578 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 LHX4Q969G2 390 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 ARMC7Q9H6L4 198 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 P2RX2Q9UBL9 471 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 IL19Q9UHD0 177 aa12.03□□□□□ -0.48
CLN3-249ENST00000636685 ZNF879B4DU55 563 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 H3BSA7 217 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 ENSAO43768 121 aaKnown RBP12.02□□□□□ -0.49
CLN3-249ENST00000636685 ADORA3P0DMS8 318 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 ETFAP13804 333 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 ZNF32P17041 273 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 GABRA5P31644 462 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 CBX1P83916 185 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 NSUN5P1Q3KNT7 163 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 FAM201AQ5SY85 155 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 WDR93Q6P2C0 686 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 UNQ6126/PRO20091Q6UXV3 157 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 ZNF621Q6ZSS3 439 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 VASH1Q7L8A9 365 aaPredicted RBP12.02□□□□□ -0.49
CLN3-249ENST00000636685 NLRC3Q7RTR2 1065 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 PDZD9Q8IXQ8 264 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 GALNT4Q8N4A0 578 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 SLC38A5Q8WUX1 472 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 TESCQ96BS2 214 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 SLC25A44Q96H78 314 aaPredicted RBP12.02□□□□□ -0.49
CLN3-249ENST00000636685 PPP1R36Q96LQ0 422 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 POFUT1Q9H488 388 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 CALML5Q9NZT1 146 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 FBLN5Q9UBX5 448 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 BTNL2Q9UIR0 455 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 VPREB3Q9UKI3 123 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 USH1CQ9Y6N9 552 aa12.02□□□□□ -0.49
CLN3-249ENST00000636685 COPEO14579 308 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 PHYHO14832 338 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 RIPK2O43353 540 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 PGA4P0DJD7 388 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 PGA3P0DJD8 388 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 ALDH3A1P30838 453 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 S100A3P33764 101 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 TGFBR2P37173 567 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 CRISP3P54108 245 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 CD69Q07108 199 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 ZNF404Q494X3 552 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 ZNF841Q6ZN19 808 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 ZER1Q7Z7L7 766 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 PTOV1Q86YD1 416 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 TRIML2Q8N7C3 387 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 OR4S1Q8NGB4 309 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 DNAJA4Q8WW22 397 aaPredicted RBP12.01□□□□□ -0.49
CLN3-249ENST00000636685 MCHR2Q969V1 340 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 TMEM19Q96HH6 336 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 TEX37Q96LM6 180 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 WDFY2Q96P53 400 aa12.01□□□□□ -0.49
CLN3-249ENST00000636685 PANX1Q96RD7 426 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms