RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 PDK3Q15120 406 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC36A3Q495N2 470 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 TMEM108Q6UXF1 575 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 FCRLAQ7L513 359 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 PXKQ7Z7A4 578 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 FANK1Q8TC84 345 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 RNF128Q8TEB7 428 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 MRPL24Q96A35 216 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 FBXO17Q96EF6 278 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SAMD8Q96LT4 415 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 OXGR1Q96P68 337 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SNX18Q96RF0 628 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SF3B5Q9BWJ5 86 aaKnown RBP12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 VCXQ9H320 206 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 TOR3AQ9H497 397 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC25A19Q9HC21 320 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 NRIP3Q9NQ35 241 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 KLHL13Q9P2N7 655 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 PRSS50Q9UI38 385 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 ING1Q9UK53 422 aaPredicted RBP12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 ORC6Q9Y5N6 252 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 CMYA5Q8N3K9 4069 aa12.06□□□□□ -0.48
SHKBP1-218ENST00000598907 IGHV3-15A0A0B4J1V0 119 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 A0A1W2PR80 420 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 NPIPB13A6NJU9 1138 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ZAR1LA6NP61 321 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 NPIPB4C9JG80 1138 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 MCIDASD6RGH6 385 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 M0R1B8 84 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 BHLHE40O14503 412 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC16A6O15403 523 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ALX3O95076 343 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 SOX14O95416 240 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 IGHMP01871 453 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 HLA-DOBP13765 273 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 CDH2P19022 906 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 SLC6A6P31641 620 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 AQP4P55087 323 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 HILS1P60008 231 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ADARB1P78563 741 aaKnown RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 IL1RL1Q01638 556 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 PTGES3Q15185 160 aaKnown RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ZIK1Q3SY52 487 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ALG10Q5BKT4 473 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 TMEM225Q6GV28 225 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 ZNF544Q6NX49 715 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 DPY19L2P2Q6ZN68 376 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 FAM122BQ7Z309 247 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 KDM8Q8N371 416 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 OR4Q3Q8NH05 313 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 OR52N5Q8NH56 324 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 VRK1Q99986 396 aaPredicted RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 USB1Q9BQ65 265 aaKnown RBP12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 INIPQ9NRY2 104 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 FAM118AQ9NWS6 357 aa12.05□□□□□ -0.48
SHKBP1-218ENST00000598907 IGKV3D-15A0A087WSY6 115 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 H3BN98 237 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 IMPA2O14732 288 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 ARPC3O15145 178 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TRAF3IP2O43734 574 aaPredicted RBP12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 OR6A2O95222 327 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TXNDC12O95881 172 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 F13BP05160 661 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CD14P08571 375 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CD40P25942 277 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CHN2P52757 468 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CDH15P55291 814 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CTXN1P60606 82 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 GINS1Q14691 196 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TAF11Q15544 211 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 SLX4IPQ5VYV7 408 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 GTF2IRD2BQ6EKJ0 949 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 ACSM5Q6NUN0 579 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 IZUMO2Q6UXV1 221 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 CREB3L2Q70SY1 520 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 GTF2IRD2Q86UP8 949 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 LNX2Q8N448 690 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 ZIC4Q8N9L1 334 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 ANKK1Q8NFD2 765 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TEX47Q8TBZ9 253 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 HRASLS5Q96KN8 279 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 PITX2Q99697 317 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TSSK6Q9BXA6 273 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TXNIPQ9H3M7 391 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 RIBC2Q9H4K1 309 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 GP6Q9HCN6 339 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 TBC1D23Q9NUY8 699 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 IL20RAQ9UHF4 553 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 NDRG4Q9ULP0 352 aaKnown RBP12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 NOX1Q9Y5S8 564 aa12.04□□□□□ -0.48
SHKBP1-218ENST00000598907 C11orf98E9PRG8 122 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 H0YAE9 185 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 RNF13O43567 381 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 IDH3BO43837 385 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 RAD51DO75771 328 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 AHCYP23526 432 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 PTAFRP25105 342 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 ZFP36P26651 326 aaKnown RBP12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 POU1F1P28069 291 aa12.03□□□□□ -0.48
SHKBP1-218ENST00000598907 EFNB1P98172 346 aa12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms