RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 ZCCHC24Q8N2G6 241 aaKnown RBP20.57■□□□□ 0.88
SHMT1-206ENST00000579558 OR51B6Q9H340 312 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 MUC13Q9H3R2 512 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 NRIP3Q9NQ35 241 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 TMCC3Q9ULS5 477 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 FZR1Q9UM11 496 aa20.57■□□□□ 0.88
SHMT1-206ENST00000579558 NSD1Q96L73 2696 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-206ENST00000579558 PRSS37A4D1T9 235 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 AHCYL1O43865 530 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 OR10H3O60404 316 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 SNAP29O95721 258 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 TP53P04637 393 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-206ENST00000579558 ADRA2AP08913 450 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 CST2P09228 141 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 MSR1P21757 451 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 FXYD6P3P58550 94 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 CARTPTQ16568 116 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 SMARCD3Q6STE5 483 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 DPY19L2P2Q6ZN68 376 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 CPEB3Q8NE35 698 aaKnown RBP20.56■□□□□ 0.88
SHMT1-206ENST00000579558 AKR7LQ8NHP1 331 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 FANK1Q8TC84 345 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 MYOZ1Q9NP98 299 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-206ENST00000579558 IER3IP1Q9Y5U9 82 aa20.56■□□□□ 0.88
SHMT1-206ENST00000579558 A0A096LNT2 108 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 M0R233 179 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 SOCS2O14508 198 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 SYNGR3O43761 229 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 PCSK6P29122 969 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 IFNGR2P38484 337 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 RPS6KA3P51812 740 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 PSG4Q00888 419 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 RGS7BPQ6MZT1 257 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-206ENST00000579558 LRP11Q86VZ4 500 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 DHFR2Q86XF0 187 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 NEU4Q8WWR8 484 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-206ENST00000579558 POLE4Q9NR33 117 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 DUSP13Q9UII6 198 aa20.55■□□□□ 0.88
SHMT1-206ENST00000579558 PRPF19Q9UMS4 504 aaKnown RBP20.55■□□□□ 0.88
SHMT1-206ENST00000579558 HIVEP2P31629 2446 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 IGFBP1P08833 259 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-206ENST00000579558 CCNOP22674 350 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 FPR3P25089 353 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 STOMP27105 288 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 PCBD1P61457 104 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 PPP2R2BQ00005 443 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 ENDOGQ14249 297 aaKnown RBP20.54■□□□□ 0.88
SHMT1-206ENST00000579558 TRIM25Q14258 630 aaKnown RBP20.54■□□□□ 0.88
SHMT1-206ENST00000579558 LCN8Q6JVE9 175 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 ADCK1Q86TW2 530 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 PIMREGQ9BSJ6 248 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 OR2H1Q9GZK4 316 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 WNT5BQ9H1J7 359 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 SYT4Q9H2B2 425 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 TPK1Q9H3S4 243 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 REV1Q9UBZ9 1251 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 TIMM10BQ9Y5J6 103 aa20.54■□□□□ 0.88
SHMT1-206ENST00000579558 FN1P02751 2386 aaKnown RBP20.53■□□□□ 0.88
SHMT1-206ENST00000579558 A0A1W2PPW3 197 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 TCRBV5S2A0A599 114 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 C12orf71A8MTZ7 269 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 INAFM1C9JVW0 142 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 NDUFS8O00217 210 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 PPP1R3DO95685 299 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 SCG5P05408 212 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 LCKP06239 509 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 CTLA4P16410 223 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 RAD52P43351 418 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 ALDH3B1P43353 468 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 UCP2P55851 309 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 LOXL1Q08397 574 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-206ENST00000579558 ALDH16A1Q8IZ83 802 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 ICA1LQ8NDH6 482 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 BCAS4Q8TDM0 211 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 FOXN4Q96NZ1 517 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 ZNF416Q9BWM5 594 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 BCL2L14Q9BZR8 327 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 OR52D1Q9H346 318 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 RERGLQ9H628 205 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 EMC7Q9NPA0 242 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 TAS2R1Q9NYW7 299 aa20.53■□□□□ 0.88
SHMT1-206ENST00000579558 MYEF2Q9P2K5 600 aaKnown RBP20.53■□□□□ 0.88
SHMT1-206ENST00000579558 LOC390937A0A1W2PQ73 354 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 SLC16A7O60669 478 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 KRT36O76013 467 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 TXNDC12O95881 172 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 DAOP14920 347 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 SLC6A6P31641 620 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 GDI2P50395 445 aaKnown RBP20.52■□□□□ 0.88
SHMT1-206ENST00000579558 SELENOVP59797 346 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 ERVS71-1P61550 626 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 MS4A2Q01362 244 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 MAD2L1BPQ15013 274 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-206ENST00000579558 RFX4Q33E94 735 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 UGT2A3Q6UWM9 527 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 PTCHD4Q6ZW05 846 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 TRPM8Q7Z2W7 1104 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 GNPDA2Q8TDQ7 276 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 POM121L2Q96KW2 1035 aa20.52■□□□□ 0.88
SHMT1-206ENST00000579558 ERMAPQ96PL5 475 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms