RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 GSSP48637 474 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 HLCSP50747 726 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CCR4P51679 360 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 EFNA3P52797 238 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 IST1P53990 364 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 DLX5P56178 289 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 DSCR4P56555 118 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 FBXW4P57775 412 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 IL5RAQ01344 420 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 SKP2Q13309 424 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 GAMTQ14353 236 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 BEAN1Q3B7T3 259 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 C6orf52Q5T4I8 152 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 FNDC7Q5VTL7 733 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 AGAP7PQ5VUJ5 663 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TMEM211Q6ICI0 200 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ZNF770Q6IQ21 691 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 SLC27A4Q6P1M0 643 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TBPL2Q6SJ96 375 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TSEN54Q7Z6J9 526 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 TMEM179BQ7Z7N9 219 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 MARCH3Q86UD3 253 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RBM45Q8IUH3 476 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 LACC1Q8IV20 430 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 PRR22Q8IZ63 422 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CADM3Q8N126 398 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 FAM98AQ8NCA5 519 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 OR4K17Q8NGC6 315 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OR4D11Q8NGI4 311 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 OR8J1Q8NGP2 316 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TEX47Q8TBZ9 253 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 GPR119Q8TDV5 335 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 GRHL3Q8TE85 626 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 PAQR8Q8TEZ7 354 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 SLC25A43Q8WUT9 341 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 RNF138Q8WVD3 245 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 LIPHQ8WWY8 451 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 TM9SF4Q92544 642 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 FGF11Q92914 225 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RFKQ969G6 155 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 DDIT4LQ96D03 193 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RNF183Q96D59 192 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 SGTBQ96EQ0 304 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 THOC3Q96J01 351 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 PLEKHA8Q96JA3 519 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CNBD2Q96M20 576 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 AGAP4Q96P64 663 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 PITX2Q99697 317 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 UTP23Q9BRU9 249 aaKnown RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 PIMREGQ9BSJ6 248 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ABHD6Q9BV23 337 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CACNG6Q9BXT2 260 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ANGPTL4Q9BY76 406 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 POTEKPQ9BYX7 375 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RIBC2Q9H4K1 309 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CCNB1IP1Q9NPC3 277 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ASCL3Q9NQ33 180 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 MED17Q9NVC6 651 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CLN6Q9NWW5 311 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 NDUFA13Q9P0J0 144 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RHCGQ9UBD6 479 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 B4GALT7Q9UBV7 327 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ZNF223Q9UK11 482 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 ICAM5Q9UMF0 924 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 MYRFQ9Y2G1 1151 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 RPH3AQ9Y2J0 694 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 SLC6A5Q9Y345 797 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ZNF337Q9Y3M9 751 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 WIF1Q9Y5W5 379 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 CEPT1Q9Y6K0 416 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 ARHGEF17Q96PE2 2063 aaPredicted RBP4.58□□□□□ -1.68
LDLR-209ENST00000558528 AKAP9Q99996 3911 aa4.58□□□□□ -1.68
LDLR-209ENST00000558528 KNTC1P50748 2209 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ANKRD12Q6UB98 2062 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 TRAV36DV7A0A075B6V5 113 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 A0A087WXM4 84 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 TRBV2A0A0J9YWF9 115 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 TRBV4-1A0A0J9YWV2 114 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 C13orf42A0A1B0GVH6 325 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 A0A1W2PNU3 283 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 C5orf52A6NGY3 159 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 UNC119BA6NIH7 251 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 CLDN24A6NM45 220 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 AHRRA9YTQ3 701 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 ETV2O00321 342 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 IMPA2O14732 288 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 MPPED1O15442 326 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 RRP8O43159 456 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 TLX3O43711 291 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 SCO2O43819 266 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 PRKNO60260 465 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 TPST2O60704 377 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 OR6A2O95222 327 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 AHSA1O95433 338 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 IFNGP01579 166 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 RPSAP08865 295 aaKnown RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 SAGP10523 405 aaPredicted RBP4.57□□□□□ -1.68
LDLR-209ENST00000558528 IFI30P13284 250 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 POU2F1P14859 743 aa4.57□□□□□ -1.68
LDLR-209ENST00000558528 NDUFB7P17568 137 aa4.57□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms