RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 A0A1B0GW55 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CHST1O43916 411 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CACNG3O60359 315 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 HUS1O60921 280 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 SRP72O76094 671 aaKnown RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 ASGR1P07306 291 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 ERCC1P07992 297 aaPredicted RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L2P0CJ85 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L3P0CJ86 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L5P0CJ88 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L6P0CJ89 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L7P0CJ90 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 SMIM10L1P0DMW3 83 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 SFTPCP11686 197 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CX3CR1P49238 355 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 RND2P52198 227 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 MXD1Q05195 221 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 MADCAM1Q13477 382 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 TWF2Q6IBS0 349 aaKnown RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 TMEM53Q6P2H8 277 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DNAJC24Q6P3W2 148 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4L9Q6RFH8 374 aaPredicted RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 LYPD2Q6UXB3 125 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CERS6Q6ZMG9 384 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 MBOAT1Q6ZNC8 495 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 H2AFVQ71UI9 128 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 BIVMQ86UB2 503 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 GABRG1Q8N1C3 465 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 BPIFCQ8NFQ6 507 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 LYPD6BQ8NI32 183 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CD300LFQ8TDQ1 290 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 GIMAP1Q8WWP7 306 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 SMIM10Q96HG1 83 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CYYR1Q96J86 154 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 CEP170P1Q96L14 293 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 TEKT3Q9BXF9 490 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 LYARQ9NX58 379 aaKnown RBP2.68□□□□□ -1.98
VPS29-205ENST00000548539 DUX4Q9UBX2 424 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 PHLPP2Q6ZVD8 1323 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 WDR19Q8NEZ3 1342 aa2.68□□□□□ -1.98
VPS29-205ENST00000548539 INSRP06213 1382 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 TRAV39A0A0B4J263 110 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 CASQ2O14958 399 aaPredicted RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 NUPL2O15504 423 aaKnown RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 EIF4E2O60573 245 aaKnown RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 ZDHHC11BP0C7U3 371 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 PRPS2P11908 318 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 STOMP27105 288 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 CYB561P49447 251 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 UBE2AP49459 152 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 CSNK1EP49674 416 aaKnown RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 IL18Q14116 193 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 SF3A2Q15428 464 aaKnown RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 HES5Q5TA89 166 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 OR52W1Q6IF63 320 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 TIFABQ6ZNK6 161 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 SCD5Q86SK9 330 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 DUSP18Q8NEJ0 188 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 NUBPLQ8TB37 319 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 EEF1AKMT3Q96AZ1 226 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 FAM210BQ96KR6 192 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 GSDMAQ96QA5 445 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 MTG1Q9BT17 334 aaPredicted RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 SLC25A39Q9BZJ4 359 aaPredicted RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 AGPAT4Q9NRZ5 378 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 C20orf96Q9NUD7 363 aaPredicted RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 DDX18Q9NVP1 670 aaKnown RBP2.67□□□□□ -1.98
VPS29-205ENST00000548539 LGALS13Q9UHV8 139 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 CD84Q9UIB8 345 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 TTC41PQ6P2S7 1318 aa2.67□□□□□ -1.98
VPS29-205ENST00000548539 TRBV9A0A0B4J1U6 114 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 LRRIQ4A6NIV6 560 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 NDUFAB1O14561 156 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 ICOSLGO75144 302 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 FKBP6O75344 327 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 HMOX2P30519 316 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 CEACAM6P40199 344 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 CDKN2BP42772 138 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 SLC1A2P43004 574 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 NAMPTP43490 491 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 RPS5P46782 204 aaKnown RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 STXBP1P61764 594 aaKnown RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 MAB21L1Q13394 359 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 GGTLC2Q14390 218 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 ZNF726P1Q15940 193 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 POU2AF1Q16633 256 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 ANKRD22Q5VYY1 191 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 TEX43Q6ZNM6 134 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 ABHD13Q7L211 337 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 SSX9Q7RTT3 188 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 CMC1Q7Z7K0 106 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 KATNAL2Q8IYT4 538 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 OR4S2Q8NH73 311 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 MARCH1Q8TCQ1 289 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 ZFP90Q8TF47 636 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 TSEN15Q8WW01 171 aaKnown RBP2.66□□□□□ -1.98
VPS29-205ENST00000548539 LINC00167Q96N53 147 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 WFIKKN1Q96NZ8 548 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 AUNIPQ9H7T9 357 aa2.66□□□□□ -1.98
VPS29-205ENST00000548539 RBAKQ9NYW8 714 aaPredicted RBP2.66□□□□□ -1.98
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms