RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	PTHLH	P12272	177 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	IFNGR1	P15260	489 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	AQP2	P41181	271 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	NANOS3	P60323	173 aa	Known RBP	13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	PSMA6	P60900	246 aa	Known RBP	13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	FAM69A	Q5T7M9	428 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	ZNF660	Q6AZW8	331 aa	Predicted RBP	13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	TMEM17	Q86X19	198 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	NPEPL1	Q8NDH3	523 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	PXT1	Q8NFP0	134 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	HAVCR2	Q8TDQ0	301 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	LOXL4	Q96JB6	756 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268		Q96M85	177 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	OR6C1	Q96RD1	312 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	NRSN2	Q9GZP1	204 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	ARL6	Q9H0F7	186 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	OR10A5	Q9H207	317 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	EXOSC3	Q9NQT5	275 aa	Known RBP	13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	CA10	Q9NS85	328 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	MRTO4	Q9UKD2	239 aa	Known RBP	13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	FLVCR2	Q9UPI3	526 aa		13.55	□□□□□ -0.24
CHFR-223	ENST00000544268	DCTN6	O00399	190 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SIGLEC5	O15389	551 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	AK1	P00568	194 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	F13B	P05160	661 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	PSMB1	P20618	241 aa	Known RBP	13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	MST1	P26927	711 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	RFC3	P40938	356 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	OR5M10	Q6IEU7	315 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	RPL13AP3	Q6NVV1	102 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	ULK3	Q6PHR2	472 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	POMZP3	Q6PJE2	187 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	TPRA1	Q86W33	373 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SLC35F2	Q8IXU6	374 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	OR6V1	Q8N148	313 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	OR6S1	Q8NH40	331 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	C3orf49	Q96BT1	292 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	TMEM68	Q96MH6	324 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	DGAT2	Q96PD7	388 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	GFI1	Q99684	422 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	TRIM2	Q9C040	744 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	AUNIP	Q9H7T9	357 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	C14orf105	Q9NVL8	296 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	ANKRD10	Q9NXR5	420 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	KLHDC2	Q9Y2U9	406 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	PCDHGA5	Q9Y5G8	931 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	TRBV2	A0A0J9YWF9	115 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268		A0A1B0GX78	115 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	ARPC5	O15511	151 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	NDUFB2	O95178	105 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	RLN2	P04090	185 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	CDKN2A	P42771	156 aa	Known RBP	13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	VEGFC	P49767	419 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	DUSP3	P51452	185 aa	Predicted RBP	13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	EFNA3	P52797	238 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	NRG3	P56975	720 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	CDK5R1	Q15078	307 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	PHF19	Q5T6S3	580 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	ARHGAP11A	Q6P4F7	1023 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	C5orf46	Q6UWT4	87 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SERPINA12	Q8IW75	414 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	BPIFC	Q8NFQ6	507 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SFT2D1	Q8WV19	159 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SNX33	Q8WV41	574 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	FOXN4	Q96NZ1	517 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	GSN-AS1	Q9NRJ2	163 aa		13.54	□□□□□ -0.24
CHFR-223	ENST00000544268	SERINC4	A6NH21	518 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	PIN1P1	O15428	100 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	RPP14	O95059	124 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	TIAF1	O95411	115 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	SPI1	P17947	270 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	FBL	P22087	321 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	EDNRA	P25101	427 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	LGALS3BP	Q08380	585 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	CCDC157	Q569K6	752 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	PLA2G2C	Q5R387	149 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	HES5	Q5TA89	166 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	SFRP4	Q6FHJ7	346 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	GLDN	Q6ZMI3	551 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	MED25	Q71SY5	747 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	C12orf45	Q8N5I9	185 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	MEIOB	Q8N635	442 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	NANP	Q8TBE9	248 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	CNN2	Q99439	309 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268		Q9N2J8	555 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	NCDN	Q9UBB6	729 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	ICAM5	Q9UMF0	924 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	RALGAPA1	Q6GYQ0	2036 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	PCNX3	Q9H6A9	2034 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268		A0A087WUJ7	227 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	GATB	O75879	557 aa	Known RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	EPX	P11678	715 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	GRK6	P43250	576 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	SIRPA	P78324	504 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	ZNF141	Q15928	474 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	VWA2	Q5GFL6	755 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	ARHGAP40	Q5TG30	622 aa		13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	HAGHL	Q6PII5	290 aa	Predicted RBP	13.53	□□□□□ -0.24
CHFR-223	ENST00000544268	BAIAP2L2	Q6UXY1	529 aa		13.53	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms