RNA–Protein interactions for RNA: ENST00000543552.5

RTN3-213, Transcript of reticulon 3, humanhuman

TSL 4

Gene RTN3, Length 529 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-213ENST00000543552 CLDN25C9JDP6 229 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 NDUFAB1O14561 156 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 CLPTM1O96005 669 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 GAAP10253 952 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 ZNF32P17041 273 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 CDAP32320 146 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 LIPAP38571 399 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 CRYBB2P43320 205 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 MAGEB1P43366 347 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 SLC9A3P48764 834 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 LAPTM4AQ15012 233 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 TRAM2Q15035 370 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 FAM27BQ5VT28 67 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 OAFQ86UD1 273 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 GEMIN6Q8WXD5 167 aaKnown RBP11.21□□□□□ -0.61
RTN3-213ENST00000543552 NSMAFQ92636 917 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 HDAC2Q92769 488 aaKnown RBP11.21□□□□□ -0.61
RTN3-213ENST00000543552 YIPF5Q969M3 257 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 NABP1Q96AH0 204 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 NMD3Q96D46 503 aaKnown RBP11.21□□□□□ -0.61
RTN3-213ENST00000543552 ELMOD3Q96FG2 381 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 WACQ9BTA9 647 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 EGLN1Q9GZT9 426 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 A4GNTQ9UNA3 340 aa11.21□□□□□ -0.61
RTN3-213ENST00000543552 A0A0A6YYJ9 748 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 C12orf71A8MTZ7 269 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 EFCAB9A8MZ26 197 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 HAX1O00165 279 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 GSTA4O15217 222 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 PIP5K1CO60331 668 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 CDC14BO60729 498 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 SASH3O75995 380 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 ZNF682O95780 498 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 CST2P09228 141 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 ZNF81P51508 661 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 ARHGDIAP52565 204 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 CTXN1P60606 82 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 FMODQ06828 376 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 SLC3A1Q07837 685 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 HFEQ30201 348 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 HSP90B2PQ58FF3 399 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 ACSM5Q6NUN0 579 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 SLC25A47Q6Q0C1 308 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 RRM2BQ7LG56 351 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 CYP4Z1Q86W10 505 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 RNF113BQ8IZP6 322 aaKnown RBP11.2□□□□□ -0.62
RTN3-213ENST00000543552 RP9Q8TA86 221 aaKnown RBP11.2□□□□□ -0.62
RTN3-213ENST00000543552 ACOT11Q8WXI4 607 aaPredicted RBP11.2□□□□□ -0.62
RTN3-213ENST00000543552 RAB1CQ92928 201 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 RCN3Q96D15 328 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 POM121L2Q96KW2 1035 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 LRRC37BQ96QE4 947 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 DIRC2Q96SL1 478 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 ELOVL3Q9HB03 270 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 LPAR2Q9HBW0 351 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 TREM2Q9NZC2 230 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 TIMM10BQ9Y5J6 103 aa11.2□□□□□ -0.62
RTN3-213ENST00000543552 A0A1W2PPL8 197 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 XKRYO14609 159 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 AHCYL1O43865 530 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ICMTO60725 284 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 PNPP00491 289 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 MSR1P21757 451 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 LAP3P28838 519 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ERVS71-1P61550 626 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ERVK-25P63136 954 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 PSG4Q00888 419 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 GLO1Q04760 184 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 PRKCDQ05655 676 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 IFI44LQ53G44 452 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 MBNL2Q5VZF2 373 aaKnown RBP11.19□□□□□ -0.62
RTN3-213ENST00000543552 ZNF730Q6ZMV8 503 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 USP51Q70EK9 711 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ZER1Q7Z7L7 766 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 SYT9Q86SS6 491 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 PEG10Q86TG7 708 aaKnown RBP11.19□□□□□ -0.62
RTN3-213ENST00000543552 NRMQ8IXM6 262 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 FAM156AQ8NDB6 213 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 OR51A7Q8NH64 312 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 AKR7LQ8NHP1 331 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 TSPAN32Q96QS1 320 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 HOPXQ9BPY8 73 aaPredicted RBP11.19□□□□□ -0.62
RTN3-213ENST00000543552 OR2H1Q9GZK4 316 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ANKRD19PQ9H560 264 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 CCDC134Q9H6E4 229 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 METTL17Q9H7H0 456 aaPredicted RBP11.19□□□□□ -0.62
RTN3-213ENST00000543552 ZNF665Q9H7R5 613 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 GRHPRQ9UBQ7 328 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 ZDHHC8Q9ULC8 765 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 NDRG4Q9ULP0 352 aaKnown RBP11.19□□□□□ -0.62
RTN3-213ENST00000543552 TMEM5Q9Y2B1 443 aa11.19□□□□□ -0.62
RTN3-213ENST00000543552 TRAV27A0A087WT01 109 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 A0A0G2JMP0 313 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 A0A0X1KG70 313 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 FAM157AC9JC47 383 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 CXCR6O00574 342 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 CCDC22O60826 627 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 GSTM3P21266 225 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 TUBG1P23258 451 aa11.18□□□□□ -0.62
RTN3-213ENST00000543552 RPL4P36578 427 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms