RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 CHP1Q99653 195 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 SLC29A1Q99808 456 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 MRPL37Q9BZE1 423 aaKnown RBP1.74□□□□□ -2.13
CD44-238ENST00000534296 TPK1Q9H3S4 243 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 VPS37BQ9H9H4 285 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 NOX3Q9HBY0 568 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 NEK6Q9HC98 313 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 ZNF160Q9HCG1 818 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 ZDHHC4Q9NPG8 344 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 LHX9Q9NQ69 397 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 INPP5EQ9NRR6 644 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 RAB20Q9NX57 234 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 DCAF16Q9NXF7 216 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 TBX21Q9UL17 535 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 TP53TG5Q9Y2B4 290 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 HYOU1Q9Y4L1 999 aa1.74□□□□□ -2.13
CD44-238ENST00000534296 CNTNAP1P78357 1384 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP1.73□□□□□ -2.13
CD44-238ENST00000534296 SCN2AQ99250 2005 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 A0A096LNJ9 63 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 IGHV3-74A0A0B4J1X5 117 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 IGHV3-66A0A0C4DH42 116 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 A0A0G2JLM5 398 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 ZNF726A6NNF4 738 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 TCP11X1B4DZS4 312 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 ERVV-1B6SEH8 477 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 SNAI2O43623 268 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 AIREO43918 545 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 CDH16O75309 829 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 FKBP6O75344 327 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 ACSM4P0C7M7 580 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 MYL2P10916 166 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 TCN2P20062 427 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 OMGP23515 440 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 HRH1P35367 487 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 MAS1LP35410 378 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 CDKN2BP42772 138 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 CSNK1EP49674 416 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 KRTAP10-1P60331 282 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 UBE2NP61088 152 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 TGM3Q08188 693 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 MERTKQ12866 999 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 SLAQ13239 276 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 SRSF5Q13243 272 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 PIGHQ14442 188 aaPredicted RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 TMEM255AQ5JRV8 349 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 FAM78AQ5JUQ0 283 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 PRAMEF20Q5VT98 475 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 C22orf42Q6IC83 251 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 TEX43Q6ZNM6 134 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 LINC00173Q6ZV60 143 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 NIPA1Q7RTP0 329 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 SNX20Q7Z614 316 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 MRPL55Q7Z7F7 128 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 CMC1Q7Z7K0 106 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 TMEM150AQ86TG1 271 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 CALHM1Q8IU99 346 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 MS4A15Q8N5U1 240 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 OR1S2Q8NGQ3 325 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 ZFP90Q8TF47 636 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 GIMAP1Q8WWP7 306 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 EEF1AKMT3Q96AZ1 226 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 PDXPQ96GD0 296 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 LINC00477Q96M19 166 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 RNF157Q96PX1 679 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 IQCGQ9H095 443 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 HMG20AQ9NP66 347 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 GPATCH2LQ9NWQ4 482 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 PISDQ9UG56 409 aa1.73□□□□□ -2.13
CD44-238ENST00000534296 CSDC2Q9Y534 153 aaKnown RBP1.73□□□□□ -2.13
CD44-238ENST00000534296 NINLQ9Y2I6 1382 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MAPK8IP3Q9UPT6 1336 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MEGF6O75095 1541 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 COL4A4P53420 1690 aaPredicted RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 TRAV19A0A0A6YYK7 116 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 IGKV1D-13A0A0B4J2D9 117 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 IGHV5-51A0A0C4DH38 117 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 TRBV11-1A0A0K0K1C0 115 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 KRTAP4-16G5E9R7 235 aaPredicted RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 WRBO00258 174 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 NDUFAB1O14561 156 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 BET1O15155 118 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CHMP2AO43633 222 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 KLHL41O60662 606 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 DPM1O60762 260 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 HUS1O60921 280 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 ENTPD5O75356 428 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CTDNEP1O95476 244 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 C6orf47O95873 294 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 SERPINA5P05154 406 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 CRYGBP07316 175 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 OR56A5P0C7T3 313 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 UBTFL6P0CB48 400 aaPredicted RBP1.72□□□□□ -2.13
CD44-238ENST00000534296 IGKV1-13P0DP09 117 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 ZNF250P15622 560 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 PSMC3P17980 439 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 PGAM1P18669 254 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 MAGP20916 626 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 DTYMKP23919 212 aa1.72□□□□□ -2.13
CD44-238ENST00000534296 NPY1RP25929 384 aa1.72□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms