RNA–Protein interactions for RNA: ENST00000511859.5

RNF4-216, Transcript of ring finger protein 4, humanhuman

TSL 1 (best) BASIC

Gene RNF4, Length 1,373 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-216ENST00000511859 TMEM38BQ9NVV0 291 aa9.7□□□□□ -0.86
RNF4-216ENST00000511859 GLTPQ9NZD2 209 aa9.7□□□□□ -0.86
RNF4-216ENST00000511859 NIPSNAP3AQ9UFN0 247 aaPredicted RBP9.7□□□□□ -0.86
RNF4-216ENST00000511859 BTNL2Q9UIR0 455 aa9.7□□□□□ -0.86
RNF4-216ENST00000511859 IGHV2-70DA0A0C4DH43 119 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 KIR2DS1A0A191URI9 304 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 CCDC154A6NI56 674 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 FAM107AO95990 144 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 C1QCP02747 245 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 PRB2P02812 416 aaPredicted RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 OPN1MWP04001 364 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 WNT2P09544 360 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 OPN1MW2P0DN77 364 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 OPN1MW3P0DN78 364 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 VSIG8P0DPA2 414 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 TNFRSF1AP19438 455 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 CBLP22681 906 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 S100A3P33764 101 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 MDH2P40926 338 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 POLR2JP52435 117 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 CLNS1AP54105 237 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 CRISP3P54108 245 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 CBX1P83916 185 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 MAPK11Q15759 364 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 NRN1LQ496H8 165 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 THEM4Q5T1C6 240 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 GPR157Q5UAW9 335 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 BRD3OSQ6XYD6 125 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 SLC16A14Q7RTX9 510 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 LSMEM1Q8N8F7 131 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 KLF14Q8TD94 323 aaPredicted RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 BCAS4Q8TDM0 211 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 DNAJA4Q8WW22 397 aaPredicted RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 GEMIN6Q8WXD5 167 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 STON2Q8WXE9 905 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 TMEM54Q969K7 222 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 VPS33AQ96AX1 596 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 SLC47A1Q96FL8 570 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 MARS2Q96GW9 593 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 CCDC115Q96NT0 180 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 CACYBPQ9HB71 228 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 SAR1AQ9NR31 198 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 DCAF16Q9NXF7 216 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 ZIM2Q9NZV7 527 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 P2RX2Q9UBL9 471 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 EIF3KQ9UBQ5 218 aaKnown RBP9.69□□□□□ -0.86
RNF4-216ENST00000511859 ARL2BPQ9Y2Y0 163 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 IFT52Q9Y366 437 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 CHST2Q9Y4C5 530 aa9.69□□□□□ -0.86
RNF4-216ENST00000511859 A0A0G2JPF8 293 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 ZSCAN5BA6NJL1 495 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 HNRNPCL2B2RXH8 293 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 HNRNPCL3B7ZW38 293 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 NDUFAB1O14561 156 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 PIP5K1CO60331 668 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 HNRNPCL1O60812 293 aaKnown RBP9.68□□□□□ -0.86
RNF4-216ENST00000511859 KRT75O95678 551 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 MELTFP08582 738 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 HNRNPCL4P0DMR1 293 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 AHCYP23526 432 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 TNFAIP6P98066 277 aaPredicted RBP9.68□□□□□ -0.86
RNF4-216ENST00000511859 LRRC74AQ0VAA2 488 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 ZMYND11Q15326 602 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 SPRNQ5BIV9 151 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 COX20Q5RI15 118 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 METTL21CQ5VZV1 264 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 WDR88Q6ZMY6 472 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 ZNF621Q6ZSS3 439 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 FUNDC1Q8IVP5 155 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 RBM15BQ8NDT2 890 aaKnown RBP9.68□□□□□ -0.86
RNF4-216ENST00000511859 OR4K5Q8NGD3 323 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 OR6X1Q8NH79 312 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 IPCEF1Q8WWN9 437 aaPredicted RBP9.68□□□□□ -0.86
RNF4-216ENST00000511859 PLEKHA8Q96JA3 519 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 OR52E6Q96RD3 313 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 PANX1Q96RD7 426 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 EPYCQ99645 322 aa9.68□□□□□ -0.86
RNF4-216ENST00000511859 MRPL39Q9NYK5 338 aaKnown RBP9.68□□□□□ -0.86
RNF4-216ENST00000511859 H3BSA7 217 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 PLPP3O14495 311 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 TNFRSF13BO14836 293 aaPredicted RBP9.67□□□□□ -0.86
RNF4-216ENST00000511859 DHHO43323 396 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 CCNOP22674 350 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 TNFSF4P23510 183 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 MPV17P39210 176 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 BIDP55957 195 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 GNB2P62879 340 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 KLF10Q13118 480 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 CDK5R2Q13319 367 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 RUSC1-AS1Q66K80 236 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 LRFN4Q6PJG9 635 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 ZER1Q7Z7L7 766 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 ZSCAN4Q8NAM6 433 aaPredicted RBP9.67□□□□□ -0.86
RNF4-216ENST00000511859 HIPK4Q8NE63 616 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 SLC25A40Q8TBP6 338 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 SLC38A5Q8WUX1 472 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 ZNF566Q969W8 418 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 DACT3Q96B18 629 aaPredicted RBP9.67□□□□□ -0.86
RNF4-216ENST00000511859 ARHGDIGQ99819 225 aa9.67□□□□□ -0.86
RNF4-216ENST00000511859 OR2J1Q9GZK6 312 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms