RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 FASTKD3Q14CZ7 662 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 EXOSC7Q15024 291 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF141Q15928 474 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 EXOC3L2Q2M3D2 409 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CCDC153Q494R4 210 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GLIPR1L2Q4G1C9 344 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SLC9B1Q4ZJI4 515 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 DEFB121Q5J5C9 76 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF678Q5SXM1 525 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 KPRPQ5T749 579 aaPredicted RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 ASPHD2Q6ICH7 369 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CDC73Q6P1J9 531 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SLC22A25Q6T423 547 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GSG1LQ6UXU4 331 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 TMPPEQ6ZT21 453 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 TRMT10CQ7L0Y3 403 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 PRSS45Q7RTY3 260 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GRINAQ7Z429 371 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 DPPA2Q7Z7J5 298 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CMC1Q7Z7K0 106 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 MOGAT3Q86VF5 341 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 IFT20Q8IY31 132 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF440Q8IYI8 595 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ZNF100Q8IYN0 542 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PRR22Q8IZ63 422 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SPATA6LQ8N4H0 392 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 KIR3DL3Q8N743 410 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 COX18Q8N8Q8 333 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 POC1AQ8NBT0 407 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 NEXN-AS1Q8NBZ9 246 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 MIPOL1Q8TD10 442 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GPR151Q8TDV0 419 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 TMEM170AQ8WVE7 144 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SGCDQ92629 289 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 EXT2Q93063 718 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PPCDCQ96CD2 204 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 FCRL1Q96LA6 429 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 RNF145Q96MT1 663 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 FOXN4Q96NZ1 517 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 TBX15Q96SF7 602 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 KCNS3Q9BQ31 491 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SUCNR1Q9BXA5 334 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 ACPTQ9BZG2 426 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 LAT2Q9GZY6 243 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 PLK3Q9H4B4 646 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 REEP4Q9H6H4 257 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 EVA1AQ9H8M9 152 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 C1orf109Q9NX04 203 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 THUMPD1Q9NXG2 353 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 MED11Q9P086 117 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 CPSF2Q9P2I0 782 aaKnown RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 CRNNQ9UBG3 495 aaPredicted RBP3.33□□□□□ -1.88
USP54-217ENST00000498213 POU2F3Q9UKI9 436 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 SLC25A15Q9Y619 301 aa3.33□□□□□ -1.88
USP54-217ENST00000498213 GIMAP1-GIMAP5A0A087WTJ2 511 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 A0A087WUV0 522 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 A0A0B4J293 547 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 A0A0J9YW62 118 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 A0A1B0GUS0 222 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 LOC102725191A0A1B0GVB3 256 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 A8MT66 165 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 NPIPB9F8W1W9 429 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 H0YC42 278 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 PDLIM1O00151 329 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 EBAG9O00559 213 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 BANF1O75531 89 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 STX11O75558 287 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 TIPRLO75663 272 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE7O76087 117 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 RGS11O94810 467 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 LRATO95237 230 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 BCL10O95999 233 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GBAP04062 536 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 SHBGP04278 402 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE12FP0CL80 117 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE12GP0CL81 117 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE12IP0CL82 117 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 IGHV4-30-4P0DP06 118 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 PRPS1L1P21108 318 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 ARR3P36575 388 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 HPCAL1P37235 193 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 RFX3P48380 749 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 CCT5P48643 541 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 FABP6P51161 128 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 IDH3GP51553 393 aaPredicted RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 PLTPP55058 493 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 TMEM33P57088 247 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 KRTAP10-3P60369 221 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 RPS23P62266 143 aaKnown RBP3.32□□□□□ -1.88
USP54-217ENST00000498213 SLC35A1P78382 337 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 C2orf80Q0P641 193 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE1Q13065 139 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GAGE4Q13068 117 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 KRT72Q14CN4 511 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 KIAA0040Q15053 153 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 NNATQ16517 81 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 MOGQ16653 247 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 IMPG1Q17R60 797 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 GRAMD1BQ3KR37 738 aa3.32□□□□□ -1.88
USP54-217ENST00000498213 SYT14P1Q58G82 188 aa3.32□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms