RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 SIGLEC5O15389 551 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SHOX2O60902 331 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 LRATO95237 230 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 FGF19O95750 216 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 HPP00738 406 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MMP1P03956 469 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SP1P08047 785 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 RHOCP08134 193 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 GSTA1P08263 222 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CD59P13987 128 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CELP19835 753 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 HMGB2P26583 209 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 LBX1P52954 281 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 AP2S1P53680 142 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CRISP1P54107 249 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MLLT10P55197 1068 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MEF2DQ14814 521 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ATXN7L3Q14CW9 347 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SF3A2Q15428 464 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SPA17Q15506 151 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ISXQ2M1V0 245 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 TP53I3Q53FA7 332 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ACTL10Q5JWF8 245 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF790Q6PG37 636 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CD200R1LQ6Q8B3 271 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM131AQ6UXB0 335 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SH2D5Q6ZV89 423 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 NET1Q7Z628 596 aaPredicted RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 PRUNE1Q86TP1 453 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SERPINA11Q86U17 422 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 TMEM135Q86UB9 458 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 KIRREL3Q8IZU9 778 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 BEST3Q8N1M1 668 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 LRRC18Q8N456 261 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MREGQ8N565 214 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 TMEM161BQ8NDZ6 487 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 DMBX1Q8NFW5 382 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 OR1M1Q8NGA1 313 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 OR5L1Q8NGL2 311 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 OR2T11Q8NH01 316 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 OR2AE1Q8NHA4 323 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ACER1Q8TDN7 264 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MRPL48Q96GC5 212 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ATP5SQ99766 215 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 AIF1LQ9BQI0 150 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 TRIM51Q9BSJ1 452 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 HCAR1Q9BXC0 346 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 PPA2Q9H2U2 334 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CPVLQ9H3G5 476 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 BOLA2Q9H3K6 86 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 TMEM27Q9HBJ8 222 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 IL1RAPQ9NPH3 570 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 GKN1Q9NS71 199 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 CLN6Q9NWW5 311 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 SDHAF2Q9NX18 166 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 MLXQ9UH92 298 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 FARSAQ9Y285 508 aaKnown RBP4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 LOXL2Q9Y4K0 774 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ASB4Q9Y574 426 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 OR1A2Q9Y585 309 aa4.14□□□□□ -1.75
CCDC88A-210ENST00000468534 ZNF518AQ6AHZ1 1483 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 MRC2Q9UBG0 1479 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 ASPDHA6ND91 283 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 SERINC4A6NH21 518 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 OR11H12B2RN74 326 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 FAM90A26D6RGX4 464 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 F5H5T6 163 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 F5H6K3 240 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 BMPR1BO00238 502 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 CXCR6O00574 342 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 XPNPEP2O43895 674 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 PRKYO43930 277 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 EIF4E2O60573 245 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 CTSVO60911 334 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 TDP2O95551 362 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 BCHEP06276 602 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 OR8U9P0C7N5 309 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 ADORA3P0DMS8 318 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 TFPIP10646 304 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 GATA1P15976 413 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 GPX3P22352 226 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 RPL5P46777 297 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 QARSP47897 775 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 RHOAP61586 193 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 MRPS11P82912 194 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 ELAVL2Q12926 359 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 GPR50Q13585 617 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 MAPK14Q16539 360 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 UPP1Q16831 310 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 SLC25A52Q3SY17 297 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 WDR25Q64LD2 544 aaPredicted RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 PRR5LQ6MZQ0 368 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 PWWP2BQ6NUJ5 590 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 MMD2Q8IY49 270 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 OR6V1Q8N148 313 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 CPSF7Q8N684 471 aaKnown RBP4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 MDS2Q8NDY4 140 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 VN1R2Q8NFZ6 395 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 OR11H1Q8NG94 326 aa4.13□□□□□ -1.75
CCDC88A-210ENST00000468534 OR1B1Q8NGR6 318 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms