RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 HOXD8P13378 290 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FABP4P15090 132 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MRPS10P82664 201 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FABP9Q0Z7S8 132 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 TRAM1Q15629 374 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SLC5A12Q1EHB4 618 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ANXA2RQ3ZCQ2 193 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 KCTD11Q693B1 232 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 AGTRAPQ6RW13 159 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 UBALD2Q8IYN6 164 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MS4A15Q8N5U1 240 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZFP41Q8N8Y5 198 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C5orf17Q8NAS9 161 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR4F6Q8NGB9 312 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR2T4Q8NH00 348 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ARRDC2Q8TBH0 407 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 TP53RKQ96S44 253 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NEU1Q99519 415 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RASL11BQ9BPW5 248 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 METTL17Q9H7H0 456 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C19orf53Q9UNZ5 99 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR1A2Q9Y585 309 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 UBE2L5PA0A1B0GUS4 154 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 KLF11O14901 512 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CHADO15335 359 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR4A8P0C604 315 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PRF1P14222 555 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ACRV1P26436 265 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HTR2CP28335 458 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PTGIRP43119 386 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GPM6AP51674 278 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GFRA1P56159 465 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ARF6P62330 175 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 VGLL4Q14135 290 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PTRH1Q86Y79 214 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LRRC25Q8N386 305 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR52H1Q8NGJ2 320 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR5M9Q8NGP3 310 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR1L1Q8NH94 360 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OLIG1Q8TAK6 271 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 WDR92Q96MX6 357 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 INPP4AQ96PE3 977 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 PPIL3Q9H2H8 161 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ASB7Q9H672 318 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C6orf106Q9H6K1 298 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 THYN1Q9P016 225 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RNF24Q9Y225 148 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NLRP1Q9C000 1473 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HDAC3O15379 428 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NDUFS5O43920 106 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MITFO75030 526 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SS18L1O75177 396 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RASAL1O95294 804 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HOXB6P17509 224 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C21orf33P30042 268 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CCKARP32238 428 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 BSGP35613 385 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SSR4P51571 173 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RAB1AP62820 205 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CDK6Q00534 326 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SKP2Q13309 424 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GPR176Q14439 515 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HFEQ30201 348 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 GLYR1Q49A26 553 aaPredicted RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 REEP3Q6NUK4 255 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ERMP1Q7Z2K6 904 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 APCDD1Q8J025 514 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZBTB34Q8NCN2 500 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR51H1Q8NH63 302 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 MYOZ3Q8TDC0 251 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A12Q96S37 553 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 IKZF4Q9H2S9 585 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 C14orf119Q9NWQ9 140 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ADCY10Q96PN6 1610 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 WNK1Q9H4A3 2382 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 DYSFO75923 2080 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SLC22A23A1A5C7 686 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CXCL11O14625 94 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LATO43561 262 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 NTSR2O95665 410 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 CST2P09228 141 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 APELAP0DMC3 54 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 IL1RNP18510 177 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FPR2P25090 351 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 HTR1DP28221 377 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RABIFP47224 123 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LIMK1P53667 647 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SUMO2P61956 95 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 KCNJ10P78508 379 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 LMAN2Q12907 356 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FIGLAQ6QHK4 219 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 EXD3Q8N9H8 876 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SFT2D1Q8WV19 159 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 ZBTB8AQ96BR9 441 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SELENOIQ9C0D9 397 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 OR2D2Q9H210 308 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 RPF2Q9H7B2 306 aaKnown RBP4.29□□□□□ -1.72
SCN1A-202ENST00000375405 INIPQ9NRY2 104 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 SPHK1Q9NYA1 384 aa4.29□□□□□ -1.72
SCN1A-202ENST00000375405 FZR1Q9UM11 496 aa4.29□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms