RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 TMEM215Q68D42 235 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 MSANTD1Q6ZTZ1 278 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 OR2AK2Q8NG84 335 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 OR51T1Q8NGJ9 327 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DCUN1D4Q92564 292 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SLCO4A1Q96BD0 722 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NMD3Q96D46 503 aaKnown RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF358Q9NW07 568 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C15orf41Q9Y2V0 281 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ALG1L2C9J202 215 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NDUFS8O00217 210 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CRTAPO75718 401 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 EPPINO95925 133 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CD1DP15813 335 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TNFSF8P32971 234 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DIO1P49895 249 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C2orf68Q2NKX9 166 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 METTL4Q8N3J2 472 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TEX26Q8N6G2 289 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 OR4A16Q8NH70 328 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 LRRC29Q8WV35 223 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C7orf26Q96N11 449 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 GALNT9Q9HCQ5 603 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 MED17Q9NVC6 651 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C1orf123Q9NWV4 160 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CCDC88AQ3V6T2 1871 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ZNF831Q5JPB2 1677 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 OR2A25A4D2G3 310 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DXOO77932 396 aaKnown RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TK1P04183 234 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 FRKP42685 505 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 RHOBP62745 196 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 Q0VFX4 171 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 APOFQ13790 326 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 PLA2G2CQ5R387 149 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 HAGHLQ6PII5 290 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 Q6ZPB1 254 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CDC20BQ86Y33 519 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 POU5F2Q8N7G0 328 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CRYGNQ8WXF5 182 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SAMD8Q96LT4 415 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NODALQ96S42 347 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DUSP22Q9NRW4 184 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 GIMAP2Q9UG22 337 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NUP98P52948 1817 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TRPM7Q96QT4 1865 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NUP205Q92621 2012 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 OR2M5A3KFT3 312 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 TSPAN4O14817 238 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SHOX2O60902 331 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 CCL3P10147 92 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SLC2A1P11166 492 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 HOXB1P14653 301 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 RBMXP38159 391 aaKnown RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 NUTF2P61970 127 aaKnown RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 IL13RA1P78552 427 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SKP2Q13309 424 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DEFB113Q30KQ7 82 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C16orf87Q6PH81 154 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 DTWD1Q8N5C7 304 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 LILRA3Q8N6C8 439 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 C11orf44Q8N8P7 122 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 EDARADDQ8WWZ3 215 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SLC25A44Q96H78 314 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 PIP5K1AQ99755 562 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 COA4Q9NYJ1 87 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 EGFL7Q9UHF1 273 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 ATG4BQ9Y4P1 393 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 IER3IP1Q9Y5U9 82 aa7.55□□□□□ -1.2
HMGB1-203ENST00000341423 SIRT4Q9Y6E7 314 aaPredicted RBP7.55□□□□□ -1.2
HMGB1-203ENST00000341423 IGHV1-45A0A0A0MS14 117 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 M0R082 166 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 PTGER1P34995 402 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ZP4Q12836 540 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CR1LQ2VPA4 569 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 Q56UQ5 140 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 MRPL2Q5T653 305 aaKnown RBP7.54□□□□□ -1.2
HMGB1-203ENST00000341423 DCDC5Q6ZRR9 648 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CCDC71LQ8N9Z2 235 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 FAM46BQ96A09 425 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 OCSTAMPQ9BR26 566 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 NUAK2Q9H093 628 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 A4GNTQ9UNA3 340 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 TSPAN11A1L157 253 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 F13BP05160 661 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 TCF4P15884 667 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 IGFBP5P24593 272 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ACTG2P63267 376 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 FUT7Q11130 342 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 TAAR8Q969N4 342 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 KCNJ15Q99712 375 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CCDC106Q9BWC9 280 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 ABCA3Q99758 1704 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 WNK1Q9H4A3 2382 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 IGHV1-69-2A0A0G2JMI3 117 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP7.54□□□□□ -1.2
HMGB1-203ENST00000341423 DHRS12A0PJE2 317 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CEBPZOSA8MTT3 80 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 CSN2P05814 226 aa7.54□□□□□ -1.2
HMGB1-203ENST00000341423 RAP2AP10114 183 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms