RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 MS4A3Q96HJ5 214 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 S100A14Q9HCY8 104 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 SRA1Q9HD15 236 aaKnown RBP13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 EMC7Q9NPA0 242 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 KRT84Q9NSB2 600 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 ST6GALNAC2Q9UJ37 374 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 KLHL21Q9UJP4 597 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 B9D1Q9UPM9 204 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 MOKQ9UQ07 419 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 TEX15Q9BXT5 2789 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 ANKRD17O75179 2603 aaKnown RBP13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 CSMD2Q7Z408 3487 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 CSMD1Q96PZ7 3565 aa13.81□□□□□ -0.2
CCDC28A-201ENST00000332797 ERICH4A6NGS2 130 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 RIIAD1A6NNX1 92 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 GPANK1O95872 356 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 IFNGP01579 166 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 SCG5P05408 212 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 CST2P09228 141 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF14P17017 642 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 CALCRP30988 508 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 GRK5P34947 590 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 KEAP1Q14145 624 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 GINS1Q14691 196 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 OTPQ5XKR4 325 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 SLC27A4Q6P1M0 643 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 UGT2A3Q6UWM9 527 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 OR6V1Q8N148 313 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 STMN2Q93045 179 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 FBXW5Q969U6 566 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 FBXO17Q96EF6 278 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF75AQ96N20 296 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF416Q9BWM5 594 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 FBXL3Q9UKT7 428 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 EDARQ9UNE0 448 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ATP23Q9Y6H3 246 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 IGLV1-36A0A0B4J1U3 117 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 FAM171A2A8MVW0 826 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 MITFO75030 526 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 MPZL1O95297 269 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 RAF1P04049 648 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 MMP7P09237 267 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF3P17036 446 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF32P17041 273 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 DNASE1P24855 282 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 HSF2Q03933 536 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 CRMP1Q14194 572 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ENDOGQ14249 297 aaKnown RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 B3GLCTQ6Y288 498 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 C20orf204Q6ZNR8 217 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 ZSCAN2Q7Z7L9 614 aaPredicted RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 OR9Q1Q8NGQ5 310 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 RACGAP1Q9H0H5 632 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 CISD1Q9NZ45 108 aaKnown RBP13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 FKBP7Q9Y680 259 aa13.8□□□□□ -0.2
CCDC28A-201ENST00000332797 RAI1Q7Z5J4 1906 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 IGHV2OR16-5A0A0B4J2B6 119 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 C12orf71A8MTZ7 269 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 E7EQL1 145 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ATE1O95260 518 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 SERPINA5P05154 406 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 IGFBP5P24593 272 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PYCR1P32322 319 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 CRISP1P54107 249 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PCBD1P61457 104 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PLP2Q04941 152 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PABPC1L2AQ5JQF8 200 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF362Q5T0B9 420 aaPredicted RBP13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 TMEM236Q5W0B7 351 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 KDM4DQ6B0I6 523 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ACSM5Q6NUN0 579 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ZBTB46Q86UZ6 589 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF584Q8IVC4 421 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PARP8Q8N3A8 854 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 ZNF611Q8N823 705 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 PROKR2Q8NFJ6 384 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 C11orf40Q8WZ69 217 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 DDOQ99489 341 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 CMC2Q9NRP2 79 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 POLR1DQ9Y2S0 133 aa13.79□□□□□ -0.2
CCDC28A-201ENST00000332797 IQCMA0A1B0GVH7 501 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 HLA-DQA2P01906 255 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 GAAP10253 952 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 CDK5Q00535 292 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 GLO1Q04760 184 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 MEP1BQ16820 701 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 SLC30A7Q8NEW0 376 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 IL17RDQ8NFM7 739 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 OR2T4Q8NH00 348 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 AKR7LQ8NHP1 331 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 OTULINQ96BN8 352 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 CCL19Q99731 98 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 CIB1Q99828 191 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 RBM4Q9BWF3 364 aaKnown RBP13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 SLC25A19Q9HC21 320 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 TMEFF2Q9UIK5 374 aaPredicted RBP13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 TIMM10BQ9Y5J6 103 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 CADP27708 2225 aa13.78□□□□□ -0.2
CCDC28A-201ENST00000332797 BAG2O95816 211 aa13.77□□□□□ -0.21
CCDC28A-201ENST00000332797 PTHP01270 115 aa13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms