RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 CUTCQ9NTM9 273 aa10.56□□□□□ -0.72
VPS39-201ENST00000318006 SSC5DA1L4H1 1573 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 A0A1B0GWA3 101 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PRRT4C9JH25 899 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 KLK8O60259 260 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 GLCEO94923 617 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SLC6A12P48065 614 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 DPTQ07507 201 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 IHHQ14623 411 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 TESK1Q15569 626 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ESPNLQ6ZVH7 1005 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 LIMS2Q7Z4I7 341 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 CMTM4Q8IZR5 234 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ZNF511Q8NB15 262 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SEMA6DQ8NFY4 1073 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR4D10Q8NGI6 311 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 C22orf15Q8WYQ4 148 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 HINT3Q9NQE9 182 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 H7C1C5 153 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PHOX2AO14813 284 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 HLA-DOBP13765 273 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 CALCRP30988 508 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 TSFMP43897 325 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 RAB13P51153 203 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 LCN6P62502 163 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OGFOD3Q6PK18 319 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PRSS35Q8N3Z0 413 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ANKRD9Q96BM1 317 aaPredicted RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 ZNF385DQ9H6B1 395 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OPA3Q9H6K4 179 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ASB1Q9Y576 335 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 A0A087WUU8 490 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 FZD6O60353 706 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 AQP8O94778 261 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 APEHP13798 732 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 DPP4P27487 766 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 CSF2RBP32927 897 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SFTPDP35247 375 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR1D4P47884 311 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 MRPL19P49406 292 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 DCAF7P61962 342 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PMPCAQ10713 525 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 NR0B2Q15466 257 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SLC36A2Q495M3 483 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SLC48A1Q6P1K1 146 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PARM1Q6UWI2 310 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 MRPL21Q7Z2W9 205 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 RABEPKQ7Z6M1 372 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 TMEM217Q8N7C4 229 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR51A4Q8NGJ6 313 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SMIM4Q8WVI0 70 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 IL1F10Q8WWZ1 152 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 NAT6Q93015 286 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 CSF3RQ99062 836 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ZDHHC5Q9C0B5 715 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ZCCHC4Q9H5U6 513 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 FGF20Q9NP95 211 aaPredicted RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 MBNL1Q9NR56 388 aaKnown RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR52A1Q9UKL2 312 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 FITM1A5D6W6 292 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 GJE1A6NN92 205 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 PLPP1O14494 284 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 ST8SIA3O43173 380 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SBK3P0C264 359 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR4E1P0C645 316 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 BCL6P41182 706 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 MEP1BQ16820 701 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 SHEQ5VZ18 495 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 WDR88Q6ZMY6 472 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 DBX2Q6ZNG2 339 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 MKXQ8IYA7 352 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 FAM185AQ8N0U4 392 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 OR1S2Q8NGQ3 325 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 TMEM18Q96B42 140 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 WDR89Q96FK6 387 aaPredicted RBP10.55□□□□□ -0.72
VPS39-201ENST00000318006 C1orf198Q9H425 327 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 CYB5R1Q9UHQ9 305 aa10.55□□□□□ -0.72
VPS39-201ENST00000318006 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 PHF1O43189 567 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 CD37P11049 281 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF93P35789 620 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 CSNK1A1P48729 337 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TMEM71Q6P5X7 295 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 FJX1Q86VR8 437 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ZNF100Q8IYN0 542 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 ST6GAL2Q96JF0 529 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 OR5B2Q96R09 309 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 PRR14Q9BWN1 585 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TMPRSS5Q9H3S3 457 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SLC25A19Q9HC21 320 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 TRBV5-4A0A0C4DH59 114 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 BCAT2O15382 392 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 PRKRAO75569 313 aaKnown RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 CD14P08571 375 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 SNCAP37840 140 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 MMP15P51511 669 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 OR10A3P58181 314 aa10.54□□□□□ -0.72
VPS39-201ENST00000318006 POU3F1Q03052 451 aaPredicted RBP10.54□□□□□ -0.72
VPS39-201ENST00000318006 CDKN3Q16667 212 aa10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms