RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 SUPT20HQ8NEM7 779 aa25.42■■□□□ 1.66
PTCD3-220ENST00000627371 PODXL2Q9NZ53 605 aa25.42■■□□□ 1.66
PTCD3-220ENST00000627371 ZBTB7BO15156 539 aaPredicted RBP25.41■■□□□ 1.66
PTCD3-220ENST00000627371 GNAI2P04899 355 aa25.41■■□□□ 1.66
PTCD3-220ENST00000627371 MVPQ14764 893 aaKnown RBP25.41■■□□□ 1.66
PTCD3-220ENST00000627371 ZNF594Q96JF6 807 aaPredicted RBP25.41■■□□□ 1.66
PTCD3-220ENST00000627371 MINPP1Q9UNW1 487 aa25.41■■□□□ 1.66
PTCD3-220ENST00000627371 ZC3H4Q9UPT8 1303 aaKnown RBP25.4■■□□□ 1.66
PTCD3-220ENST00000627371 XDHP47989 1333 aa25.39■■□□□ 1.66
PTCD3-220ENST00000627371 VPS33BQ9H267 617 aa25.39■■□□□ 1.66
PTCD3-220ENST00000627371 ANKIB1Q9P2G1 1089 aa25.39■■□□□ 1.66
PTCD3-220ENST00000627371 COL4A5P29400 1685 aa25.39■■□□□ 1.65
PTCD3-220ENST00000627371 RRP1P56182 461 aaKnown RBP25.38■■□□□ 1.65
PTCD3-220ENST00000627371 C20orf194Q5TEA3 1177 aa25.38■■□□□ 1.65
PTCD3-220ENST00000627371 LDHAL6AQ6ZMR3 332 aa25.38■■□□□ 1.65
PTCD3-220ENST00000627371 POLLQ9UGP5 575 aa25.38■■□□□ 1.65
PTCD3-220ENST00000627371 DDX19BQ9UMR2 479 aa25.38■■□□□ 1.65
PTCD3-220ENST00000627371 COG6Q9Y2V7 657 aa25.38■■□□□ 1.65
PTCD3-220ENST00000627371 RFX5P48382 616 aaPredicted RBP25.37■■□□□ 1.65
PTCD3-220ENST00000627371 MTX1Q13505 466 aa25.37■■□□□ 1.65
PTCD3-220ENST00000627371 TBC1D16Q8TBP0 767 aa25.37■■□□□ 1.65
PTCD3-220ENST00000627371 GGA1Q9UJY5 639 aa25.37■■□□□ 1.65
PTCD3-220ENST00000627371 PPIP5K2O43314 1243 aa25.36■■□□□ 1.65
PTCD3-220ENST00000627371 CHRNDQ07001 517 aa25.36■■□□□ 1.65
PTCD3-220ENST00000627371 ANKRD2Q9GZV1 360 aa25.36■■□□□ 1.65
PTCD3-220ENST00000627371 CNNM1Q9NRU3 951 aa25.36■■□□□ 1.65
PTCD3-220ENST00000627371 C6orf229H3BNL8 230 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 UFL1O94874 794 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 ATP2B4P23634 1241 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 KIAA2012Q0VF49 1180 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 AOC3Q16853 763 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 LARGE2Q8N3Y3 721 aa25.35■■□□□ 1.65
PTCD3-220ENST00000627371 PTPN12Q05209 780 aaKnown RBP25.34■■□□□ 1.65
PTCD3-220ENST00000627371 KLHDC4Q8TBB5 520 aa25.34■■□□□ 1.65
PTCD3-220ENST00000627371 EYA3Q99504 573 aa25.34■■□□□ 1.65
PTCD3-220ENST00000627371 JDP2Q8WYK2 163 aa25.33■■□□□ 1.65
PTCD3-220ENST00000627371 PUS3Q9BZE2 481 aaKnown RBP25.33■■□□□ 1.65
PTCD3-220ENST00000627371 C1orf115Q9H7X2 142 aa25.33■■□□□ 1.65
PTCD3-220ENST00000627371 SRGAP3O43295 1099 aa25.32■■□□□ 1.64
PTCD3-220ENST00000627371 WASHC4Q2M389 1173 aa25.32■■□□□ 1.64
PTCD3-220ENST00000627371 CHMP4BQ9H444 224 aaKnown RBP25.32■■□□□ 1.64
PTCD3-220ENST00000627371 LEMD3Q9Y2U8 911 aa25.32■■□□□ 1.64
PTCD3-220ENST00000627371 RIPOR2Q9Y4F9 1068 aa25.32■■□□□ 1.64
PTCD3-220ENST00000627371 LRRC24Q50LG9 513 aa25.31■■□□□ 1.64
PTCD3-220ENST00000627371 NIM1KQ8IY84 436 aa25.31■■□□□ 1.64
PTCD3-220ENST00000627371 GPR101Q96P66 508 aaPredicted RBP25.31■■□□□ 1.64
PTCD3-220ENST00000627371 MROH5Q6ZUA9 1318 aa25.31■■□□□ 1.64
PTCD3-220ENST00000627371 FZD9O00144 591 aa25.3■■□□□ 1.64
PTCD3-220ENST00000627371 COPRSQ9NQ92 184 aa25.3■■□□□ 1.64
PTCD3-220ENST00000627371 FBXO3Q9UK99 471 aa25.3■■□□□ 1.64
PTCD3-220ENST00000627371 ZNF804BA4D1E1 1349 aa25.3■■□□□ 1.64
PTCD3-220ENST00000627371 MED23Q9ULK4 1368 aa25.3■■□□□ 1.64
PTCD3-220ENST00000627371 PSME4Q14997 1843 aa25.29■■□□□ 1.64
PTCD3-220ENST00000627371 EYA2O00167 538 aa25.29■■□□□ 1.64
PTCD3-220ENST00000627371 TAF5LO75529 589 aa25.29■■□□□ 1.64
PTCD3-220ENST00000627371 HELBQ8NG08 1087 aaPredicted RBP25.29■■□□□ 1.64
PTCD3-220ENST00000627371 ZC3H12CQ9C0D7 883 aaKnown RBP25.29■■□□□ 1.64
PTCD3-220ENST00000627371 ZBTB40Q9NUA8 1239 aa25.29■■□□□ 1.64
PTCD3-220ENST00000627371 PNMA6EA0A0J9YXQ4 647 aa25.28■■□□□ 1.64
PTCD3-220ENST00000627371 WTIPA6NIX2 430 aaPredicted RBP25.28■■□□□ 1.64
PTCD3-220ENST00000627371 RIMBP2O15034 1052 aa25.28■■□□□ 1.64
PTCD3-220ENST00000627371 ZNF784Q8NCA9 323 aaPredicted RBP25.28■■□□□ 1.64
PTCD3-220ENST00000627371 SCN9AQ15858 1988 aa25.27■■□□□ 1.64
PTCD3-220ENST00000627371 CIAO1O76071 339 aa25.27■■□□□ 1.64
PTCD3-220ENST00000627371 KCNJ4P48050 445 aa25.27■■□□□ 1.64
PTCD3-220ENST00000627371 ATP8B2P98198 1209 aa25.27■■□□□ 1.64
PTCD3-220ENST00000627371 PA2G4Q9UQ80 394 aaKnown RBP25.27■■□□□ 1.64
PTCD3-220ENST00000627371 WDR90Q96KV7 1748 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 GLTPD2A6NH11 291 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 METTL24Q5JXM2 366 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 CEP85Q6P2H3 762 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 SIL1Q9H173 461 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 ZNRF3Q9ULT6 936 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 ZNF541Q9H0D2 1346 aa25.26■■□□□ 1.63
PTCD3-220ENST00000627371 EIF6P56537 245 aaKnown RBP25.25■■□□□ 1.63
PTCD3-220ENST00000627371 POLA2Q14181 598 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 DPY19L2Q6NUT2 758 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 ATG9AQ7Z3C6 839 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 VGLL2Q8N8G2 317 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 SSH3Q8TE77 659 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 KDM2BQ8NHM5 1336 aa25.25■■□□□ 1.63
PTCD3-220ENST00000627371 IRS2Q9Y4H2 1338 aa25.24■■□□□ 1.63
PTCD3-220ENST00000627371 SNAP23O00161 211 aa25.24■■□□□ 1.63
PTCD3-220ENST00000627371 ZNF526Q8TF50 670 aaPredicted RBP25.24■■□□□ 1.63
PTCD3-220ENST00000627371 DBNDD1Q9H9R9 158 aa25.24■■□□□ 1.63
PTCD3-220ENST00000627371 ECE2O60344 883 aa25.23■■□□□ 1.63
PTCD3-220ENST00000627371 PDE8BO95263 885 aa25.23■■□□□ 1.63
PTCD3-220ENST00000627371 IL15P40933 162 aaPredicted RBP25.23■■□□□ 1.63
PTCD3-220ENST00000627371 UBE4AQ14139 1066 aa25.23■■□□□ 1.63
PTCD3-220ENST00000627371 C15orf52Q6ZUT6 534 aaKnown RBP25.23■■□□□ 1.63
PTCD3-220ENST00000627371 ZNF646O15015 1829 aaPredicted RBP25.22■■□□□ 1.63
PTCD3-220ENST00000627371 SCN4AP35499 1836 aa25.22■■□□□ 1.63
PTCD3-220ENST00000627371 YDJCA8MPS7 323 aa25.22■■□□□ 1.63
PTCD3-220ENST00000627371 KLRK1P26718 216 aa25.22■■□□□ 1.63
PTCD3-220ENST00000627371 DOK7Q18PE1 504 aa25.22■■□□□ 1.63
PTCD3-220ENST00000627371 TXNRD3Q86VQ6 643 aa25.22■■□□□ 1.63
PTCD3-220ENST00000627371 GPBP1L1Q9HC44 474 aaPredicted RBP25.22■■□□□ 1.63
PTCD3-220ENST00000627371 G3V3G9 751 aa25.21■■□□□ 1.63
PTCD3-220ENST00000627371 DCAF8Q5TAQ9 597 aa25.21■■□□□ 1.63
PTCD3-220ENST00000627371 RPAP2Q8IXW5 612 aaPredicted RBP25.21■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms