RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 RIMBP2O15034 1052 aa16.96■□□□□ 0.31
LINC00540-202ENST00000616974 LRRC24Q50LG9 513 aa16.96■□□□□ 0.31
LINC00540-202ENST00000616974 TXNRD3Q86VQ6 643 aa16.96■□□□□ 0.31
LINC00540-202ENST00000616974 PSMD1Q99460 953 aa16.96■□□□□ 0.31
LINC00540-202ENST00000616974 KCNQ5Q9NR82 932 aa16.96■□□□□ 0.31
LINC00540-202ENST00000616974 PA2G4Q9UQ80 394 aaKnown RBP16.96■□□□□ 0.31
LINC00540-202ENST00000616974 IARSP41252 1262 aaKnown RBP16.96■□□□□ 0.3
LINC00540-202ENST00000616974 RFX5P48382 616 aaPredicted RBP16.96■□□□□ 0.3
LINC00540-202ENST00000616974 IFIT5Q13325 482 aaKnown RBP16.96■□□□□ 0.3
LINC00540-202ENST00000616974 BSDC1Q9NW68 430 aaPredicted RBP16.96■□□□□ 0.3
LINC00540-202ENST00000616974 ANKRD18BA2A2Z9 1011 aa16.95■□□□□ 0.3
LINC00540-202ENST00000616974 TBC1D16Q8TBP0 767 aa16.95■□□□□ 0.3
LINC00540-202ENST00000616974 CDC5LQ99459 802 aaKnown RBP16.95■□□□□ 0.3
LINC00540-202ENST00000616974 HSP90B1P14625 803 aaKnown RBP16.94■□□□□ 0.3
LINC00540-202ENST00000616974 SOGA3Q5TF21 947 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 RTFDC1Q9BY42 306 aaPredicted RBP16.94■□□□□ 0.3
LINC00540-202ENST00000616974 ANKIB1Q9P2G1 1089 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 PNMA6EA0A0J9YXQ4 647 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 ZBTB7BO15156 539 aaPredicted RBP16.94■□□□□ 0.3
LINC00540-202ENST00000616974 PPIP5K2O43314 1243 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 CHRNDQ07001 517 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 NMRK2Q9NPI5 230 aa16.94■□□□□ 0.3
LINC00540-202ENST00000616974 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP16.94■□□□□ 0.3
LINC00540-202ENST00000616974 C6orf229H3BNL8 230 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 UFL1O94874 794 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 CCDC57Q2TAC2 916 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 SIL1Q9H173 461 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 DBNDD1Q9H9R9 158 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 ZNF646O15015 1829 aaPredicted RBP16.93■□□□□ 0.3
LINC00540-202ENST00000616974 YDJCA8MPS7 323 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 DDNO94850 711 aaPredicted RBP16.93■□□□□ 0.3
LINC00540-202ENST00000616974 IGHMBP2P38935 993 aaKnown RBP16.93■□□□□ 0.3
LINC00540-202ENST00000616974 PTPN12Q05209 780 aaKnown RBP16.93■□□□□ 0.3
LINC00540-202ENST00000616974 DOK7Q18PE1 504 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 LARGE2Q8N3Y3 721 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 MPHOSPH8Q99549 860 aa16.93■□□□□ 0.3
LINC00540-202ENST00000616974 CC2D2BQ6DHV5 1058 aa16.91■□□□□ 0.3
LINC00540-202ENST00000616974 LDHAL6AQ6ZMR3 332 aa16.91■□□□□ 0.3
LINC00540-202ENST00000616974 PODXL2Q9NZ53 605 aa16.91■□□□□ 0.3
LINC00540-202ENST00000616974 XDHP47989 1333 aa16.91■□□□□ 0.3
LINC00540-202ENST00000616974 POTECB2RU33 542 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 KIAA2012Q0VF49 1180 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 WASHC4Q2M389 1173 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 RIPOR2Q9Y4F9 1068 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 MVPQ14764 893 aaKnown RBP16.9■□□□□ 0.3
LINC00540-202ENST00000616974 TAF7LQ5H9L4 462 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 CNNM1Q9NRU3 951 aa16.9■□□□□ 0.3
LINC00540-202ENST00000616974 FZD9O00144 591 aa16.89■□□□□ 0.29
LINC00540-202ENST00000616974 ATG9AQ7Z3C6 839 aa16.89■□□□□ 0.29
LINC00540-202ENST00000616974 TMC4Q7Z404 712 aa16.89■□□□□ 0.29
LINC00540-202ENST00000616974 GGA1Q9UJY5 639 aa16.89■□□□□ 0.29
LINC00540-202ENST00000616974 IRS2Q9Y4H2 1338 aa16.89■□□□□ 0.29
LINC00540-202ENST00000616974 SHTN1A0MZ66 631 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 SRGAP3O43295 1099 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 RAD17O75943 681 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 GNAI3P08754 354 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 RRP1P56182 461 aaKnown RBP16.88■□□□□ 0.29
LINC00540-202ENST00000616974 PSME4Q14997 1843 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 GNAI2P04899 355 aa16.88■□□□□ 0.29
LINC00540-202ENST00000616974 TMX4Q9H1E5 349 aaPredicted RBP16.88■□□□□ 0.29
LINC00540-202ENST00000616974 VGLL2Q8N8G2 317 aa16.87■□□□□ 0.29
LINC00540-202ENST00000616974 GLTPD2A6NH11 291 aa16.87■□□□□ 0.29
LINC00540-202ENST00000616974 CXCL9Q07325 125 aa16.87■□□□□ 0.29
LINC00540-202ENST00000616974 MXD3Q9BW11 206 aa16.87■□□□□ 0.29
LINC00540-202ENST00000616974 RRAGCQ9HB90 399 aa16.87■□□□□ 0.29
LINC00540-202ENST00000616974 ZNF804BA4D1E1 1349 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 ECE2O60344 883 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 POTEIP0CG38 1075 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 POTEJP0CG39 1038 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 SIRT2Q8IXJ6 389 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 GPBP1L1Q9HC44 474 aaPredicted RBP16.86■□□□□ 0.29
LINC00540-202ENST00000616974 GJA3Q9Y6H8 435 aa16.86■□□□□ 0.29
LINC00540-202ENST00000616974 NIM1KQ8IY84 436 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 JDP2Q8WYK2 163 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 ZBTB40Q9NUA8 1239 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 JAG2Q9Y219 1238 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 ZBTB12Q9Y330 459 aaPredicted RBP16.85■□□□□ 0.29
LINC00540-202ENST00000616974 WDR90Q96KV7 1748 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 POLR2AP24928 1970 aaKnown RBP16.85■□□□□ 0.29
LINC00540-202ENST00000616974 KIF3CO14782 793 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 MTX1Q13505 466 aa16.85■□□□□ 0.29
LINC00540-202ENST00000616974 SUPT16HQ9Y5B9 1047 aaKnown RBP16.85■□□□□ 0.29
LINC00540-202ENST00000616974 EYA2O00167 538 aa16.84■□□□□ 0.29
LINC00540-202ENST00000616974 CEP85Q6P2H3 762 aa16.84■□□□□ 0.29
LINC00540-202ENST00000616974 IRX6P78412 446 aaPredicted RBP16.84■□□□□ 0.29
LINC00540-202ENST00000616974 ZC3H12CQ9C0D7 883 aaKnown RBP16.84■□□□□ 0.29
LINC00540-202ENST00000616974 ZNRF3Q9ULT6 936 aa16.84■□□□□ 0.29
LINC00540-202ENST00000616974 ATP2B4P23634 1241 aa16.83■□□□□ 0.28
LINC00540-202ENST00000616974 GYG1P46976 350 aa16.83■□□□□ 0.28
LINC00540-202ENST00000616974 METTL24Q5JXM2 366 aa16.83■□□□□ 0.28
LINC00540-202ENST00000616974 SUPT20HQ8NEM7 779 aa16.83■□□□□ 0.28
LINC00540-202ENST00000616974 MED23Q9ULK4 1368 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 PSMD14O00487 310 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 PDE3AQ14432 1141 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 GRIPAP1Q4V328 841 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 CRBNQ96SW2 442 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 IQSEC3Q9UPP2 1182 aaPredicted RBP16.82■□□□□ 0.28
LINC00540-202ENST00000616974 MYH13Q9UKX3 1938 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 SCNN1DP51172 638 aa16.82■□□□□ 0.28
LINC00540-202ENST00000616974 POLA2Q14181 598 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms