RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 KAZALD1Q96I82 304 aa12.51□□□□□ -0.41
UPF1-213ENST00000601981 DICER1Q9UPY3 1922 aaKnown RBP12.5□□□□□ -0.41
UPF1-213ENST00000601981 SUPT20HQ8NEM7 779 aa12.5□□□□□ -0.41
UPF1-213ENST00000601981 TAOK3Q9H2K8 898 aa12.5□□□□□ -0.41
UPF1-213ENST00000601981 BSDC1Q9NW68 430 aaPredicted RBP12.5□□□□□ -0.41
UPF1-213ENST00000601981 A0A1B0GUL6 1792 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 SRGAP3O43295 1099 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 C1QTNF8P60827 252 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 MTX1Q13505 466 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 DPP8Q6V1X1 898 aaPredicted RBP12.49□□□□□ -0.41
UPF1-213ENST00000601981 LDHAL6AQ6ZMR3 332 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 MPNDQ8N594 471 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 C7orf43Q8WVR3 580 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 ANKRD2Q9GZV1 360 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 CNNM1Q9NRU3 951 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 ANKIB1Q9P2G1 1089 aa12.49□□□□□ -0.41
UPF1-213ENST00000601981 XDHP47989 1333 aa12.48□□□□□ -0.41
UPF1-213ENST00000601981 LTBP3Q9NS15 1303 aa12.48□□□□□ -0.41
UPF1-213ENST00000601981 HMMRO75330 724 aa12.48□□□□□ -0.41
UPF1-213ENST00000601981 FKBP4Q02790 459 aaKnown RBP eCLIP12.48□□□□□ -0.41
UPF1-213ENST00000601981 PSMD1Q99460 953 aa12.48□□□□□ -0.41
UPF1-213ENST00000601981 FBXO3Q9UK99 471 aa12.48□□□□□ -0.41
UPF1-213ENST00000601981 RPAP2Q8IXW5 612 aaPredicted RBP12.47□□□□□ -0.41
UPF1-213ENST00000601981 EYA3Q99504 573 aa12.47□□□□□ -0.41
UPF1-213ENST00000601981 C1orf115Q9H7X2 142 aa12.47□□□□□ -0.41
UPF1-213ENST00000601981 NSFL1CQ9UNZ2 370 aaKnown RBP12.47□□□□□ -0.41
UPF1-213ENST00000601981 CEP350Q5VT06 3117 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 LTBP1Q14766 1721 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 MROH5Q6ZUA9 1318 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 COL4A1P02462 1669 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 ATP2B4P23634 1241 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 KCNJ4P48050 445 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 ATP8B2P98198 1209 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 ZNF594Q96JF6 807 aaPredicted RBP12.46□□□□□ -0.41
UPF1-213ENST00000601981 VPS33BQ9H267 617 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 PODXL2Q9NZ53 605 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 GGA1Q9UJY5 639 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 MINPP1Q9UNW1 487 aa12.46□□□□□ -0.41
UPF1-213ENST00000601981 TIAM2Q8IVF5 1701 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 C6orf229H3BNL8 230 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 CIAO1O76071 339 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 LMNB1P20700 586 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 CHRNDQ07001 517 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 CEP85Q6P2H3 762 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 OLFM4Q6UX06 510 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 SMC5Q8IY18 1101 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 COPRSQ9NQ92 184 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 LEMD3Q9Y2U8 911 aa12.45□□□□□ -0.42
UPF1-213ENST00000601981 EYA2O00167 538 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 NFKBIEO00221 500 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 UFL1O94874 794 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 IL15P40933 162 aaPredicted RBP12.44□□□□□ -0.42
UPF1-213ENST00000601981 RFX5P48382 616 aaPredicted RBP12.44□□□□□ -0.42
UPF1-213ENST00000601981 GPSM2P81274 684 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 RASSF7Q02833 373 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 PTPN12Q05209 780 aaKnown RBP12.44□□□□□ -0.42
UPF1-213ENST00000601981 G3BP1Q13283 466 aaKnown RBP eCLIP12.44□□□□□ -0.42
UPF1-213ENST00000601981 OS9Q13438 667 aaPredicted RBP12.44□□□□□ -0.42
UPF1-213ENST00000601981 HSP90AB4PQ58FF6 505 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 METTL24Q5JXM2 366 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 SSH3Q8TE77 659 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 RTFDC1Q9BY42 306 aaPredicted RBP12.44□□□□□ -0.42
UPF1-213ENST00000601981 SIL1Q9H173 461 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 SNED1Q8TER0 1413 aa12.44□□□□□ -0.42
UPF1-213ENST00000601981 PNMA6EA0A0J9YXQ4 647 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 G3V3G9 751 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 PPIP5K2O43314 1243 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 IARSP41252 1262 aaKnown RBP12.43□□□□□ -0.42
UPF1-213ENST00000601981 POLA2Q14181 598 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 WASHC4Q2M389 1173 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 DCAF8Q5TAQ9 597 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 LARGE2Q8N3Y3 721 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 KLHDC4Q8TBB5 520 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 TBC1D16Q8TBP0 767 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 JDP2Q8WYK2 163 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 ZC3H12CQ9C0D7 883 aaKnown RBP12.43□□□□□ -0.42
UPF1-213ENST00000601981 RNF181Q9P0P0 153 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 CEP126Q9P2H0 1117 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 DUOX1Q9NRD9 1551 aa12.43□□□□□ -0.42
UPF1-213ENST00000601981 ZNF804BA4D1E1 1349 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 ZC3H4Q9UPT8 1303 aaKnown RBP12.42□□□□□ -0.42
UPF1-213ENST00000601981 SURF6O75683 361 aaKnown RBP12.42□□□□□ -0.42
UPF1-213ENST00000601981 ERC1Q8IUD2 1116 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 GCC1Q96CN9 775 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 PUS3Q9BZE2 481 aaKnown RBP12.42□□□□□ -0.42
UPF1-213ENST00000601981 ZNF277Q9NRM2 450 aaPredicted RBP12.42□□□□□ -0.42
UPF1-213ENST00000601981 RIPOR2Q9Y4F9 1068 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 MYH13Q9UKX3 1938 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 MED23Q9ULK4 1368 aa12.42□□□□□ -0.42
UPF1-213ENST00000601981 PDE8BO95263 885 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 KIAA2012Q0VF49 1180 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 UBE4AQ14139 1066 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 PUM3Q15397 648 aaKnown RBP12.41□□□□□ -0.42
UPF1-213ENST00000601981 LRRC24Q50LG9 513 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 C9orf131Q5VYM1 1079 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 SKAP1Q86WV1 359 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 NIM1KQ8IY84 436 aa12.41□□□□□ -0.42
UPF1-213ENST00000601981 PA2G4Q9UQ80 394 aaKnown RBP12.41□□□□□ -0.42
UPF1-213ENST00000601981 RBM19Q9Y4C8 960 aaKnown RBP12.41□□□□□ -0.42
UPF1-213ENST00000601981 ARAP2Q8WZ64 1704 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms