RNA–Protein interactions for RNA: ENST00000598938.1

LIG1-216, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 377 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-216ENST00000598938 LMBR1LQ6UX01 489 aa22.82■■□□□ 1.24
LIG1-216ENST00000598938 CELF1Q92879 486 aaKnown RBP22.82■■□□□ 1.24
LIG1-216ENST00000598938 BICC1Q9H694 974 aaKnown RBP22.82■■□□□ 1.24
LIG1-216ENST00000598938 MKRN1Q9UHC7 482 aaKnown RBP22.82■■□□□ 1.24
LIG1-216ENST00000598938 FAM161AQ3B820 660 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 CCDC93Q567U6 631 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 ANKRD44Q8N8A2 993 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 PRDM10Q9NQV6 1147 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 HDAC5Q9UQL6 1122 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 TAF1P21675 1872 aa22.81■■□□□ 1.24
LIG1-216ENST00000598938 ZBTB7BO15156 539 aaPredicted RBP22.8■■□□□ 1.24
LIG1-216ENST00000598938 POTEIP0CG38 1075 aa22.8■■□□□ 1.24
LIG1-216ENST00000598938 POTEJP0CG39 1038 aa22.8■■□□□ 1.24
LIG1-216ENST00000598938 MVPQ14764 893 aaKnown RBP22.8■■□□□ 1.24
LIG1-216ENST00000598938 ITGA6P23229 1130 aa22.79■■□□□ 1.24
LIG1-216ENST00000598938 RPS8P62241 208 aaKnown RBP22.79■■□□□ 1.24
LIG1-216ENST00000598938 TMC4Q7Z404 712 aa22.79■■□□□ 1.24
LIG1-216ENST00000598938 CDC5LQ99459 802 aaKnown RBP22.79■■□□□ 1.24
LIG1-216ENST00000598938 TAF1DQ9H5J8 278 aaPredicted RBP22.79■■□□□ 1.24
LIG1-216ENST00000598938 ATP6V0A2Q9Y487 856 aa22.79■■□□□ 1.24
LIG1-216ENST00000598938 LRRFIP2Q9Y608 721 aaKnown RBP22.79■■□□□ 1.24
LIG1-216ENST00000598938 SNED1Q8TER0 1413 aa22.79■■□□□ 1.24
LIG1-216ENST00000598938 LRRC37AA6NMS7 1700 aa22.78■■□□□ 1.24
LIG1-216ENST00000598938 FKBP4Q02790 459 aaKnown RBP eCLIP22.78■■□□□ 1.24
LIG1-216ENST00000598938 SLC51AQ86UW1 340 aa22.78■■□□□ 1.24
LIG1-216ENST00000598938 COG6Q9Y2V7 657 aa22.78■■□□□ 1.24
LIG1-216ENST00000598938 CC2D2BQ6DHV5 1058 aa22.77■■□□□ 1.24
LIG1-216ENST00000598938 OLFM4Q6UX06 510 aa22.77■■□□□ 1.24
LIG1-216ENST00000598938 ANKRD18AQ8IVF6 992 aa22.77■■□□□ 1.24
LIG1-216ENST00000598938 CHMP3Q9Y3E7 222 aa22.77■■□□□ 1.24
LIG1-216ENST00000598938 ANKRD18BA2A2Z9 1011 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 TMEM88BA6NKF7 163 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 FOXN1O15353 648 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 GNAI2P04899 355 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 IFIT5Q13325 482 aaKnown RBP22.76■■□□□ 1.23
LIG1-216ENST00000598938 SP8Q8IXZ3 490 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 DDX19BQ9UMR2 479 aa22.76■■□□□ 1.23
LIG1-216ENST00000598938 CCDC57Q2TAC2 916 aa22.75■■□□□ 1.23
LIG1-216ENST00000598938 RTKN2Q8IZC4 609 aa22.75■■□□□ 1.23
LIG1-216ENST00000598938 AIDAQ96BJ3 306 aa22.75■■□□□ 1.23
LIG1-216ENST00000598938 ITGBL1O95965 494 aaPredicted RBP22.74■■□□□ 1.23
LIG1-216ENST00000598938 CTCFP49711 727 aaPredicted RBP22.74■■□□□ 1.23
LIG1-216ENST00000598938 PNMA8AQ86V59 439 aaPredicted RBP22.74■■□□□ 1.23
LIG1-216ENST00000598938 BSDC1Q9NW68 430 aaPredicted RBP22.74■■□□□ 1.23
LIG1-216ENST00000598938 HACL1Q9UJ83 578 aa22.74■■□□□ 1.23
LIG1-216ENST00000598938 IGHMBP2P38935 993 aaKnown RBP22.73■■□□□ 1.23
LIG1-216ENST00000598938 MTX1Q13505 466 aa22.73■■□□□ 1.23
LIG1-216ENST00000598938 GRIPAP1Q4V328 841 aa22.73■■□□□ 1.23
LIG1-216ENST00000598938 TMX4Q9H1E5 349 aaPredicted RBP22.72■■□□□ 1.23
LIG1-216ENST00000598938 SUPT16HQ9Y5B9 1047 aaKnown RBP22.72■■□□□ 1.23
LIG1-216ENST00000598938 SPEF2Q9C093 1822 aa22.72■■□□□ 1.23
LIG1-216ENST00000598938 RFX5P48382 616 aaPredicted RBP22.71■■□□□ 1.23
LIG1-216ENST00000598938 VEGFBP49765 207 aa22.71■■□□□ 1.23
LIG1-216ENST00000598938 CHMP4BQ9H444 224 aaKnown RBP22.71■■□□□ 1.23
LIG1-216ENST00000598938 ZBTB40Q9NUA8 1239 aa22.71■■□□□ 1.23
LIG1-216ENST00000598938 ZNF541Q9H0D2 1346 aa22.71■■□□□ 1.23
LIG1-216ENST00000598938 EPHX2P34913 555 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 ZNF594Q96JF6 807 aaPredicted RBP22.7■■□□□ 1.22
LIG1-216ENST00000598938 PSMD1Q99460 953 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 MPHOSPH8Q99549 860 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 WBP1LQ9NX94 342 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 THSD7BQ9C0I4 1608 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 LTBP1Q14766 1721 aa22.7■■□□□ 1.22
LIG1-216ENST00000598938 RASSF10A6NK89 507 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 FZD9O00144 591 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 EAPPQ56P03 285 aaPredicted RBP22.69■■□□□ 1.22
LIG1-216ENST00000598938 TAF7LQ5H9L4 462 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 GPC2Q8N158 579 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 C1orf115Q9H7X2 142 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 ZNF277Q9NRM2 450 aaPredicted RBP22.69■■□□□ 1.22
LIG1-216ENST00000598938 MINPP1Q9UNW1 487 aa22.69■■□□□ 1.22
LIG1-216ENST00000598938 DUOX1Q9NRD9 1551 aa22.68■■□□□ 1.22
LIG1-216ENST00000598938 IARSP41252 1262 aaKnown RBP22.68■■□□□ 1.22
LIG1-216ENST00000598938 MPNDQ8N594 471 aa22.68■■□□□ 1.22
LIG1-216ENST00000598938 RTFDC1Q9BY42 306 aaPredicted RBP22.68■■□□□ 1.22
LIG1-216ENST00000598938 PODXL2Q9NZ53 605 aa22.68■■□□□ 1.22
LIG1-216ENST00000598938 GPSM2P81274 684 aa22.67■■□□□ 1.22
LIG1-216ENST00000598938 PTPN12Q05209 780 aaKnown RBP22.67■■□□□ 1.22
LIG1-216ENST00000598938 DPP8Q6V1X1 898 aaPredicted RBP22.67■■□□□ 1.22
LIG1-216ENST00000598938 LDHAL6AQ6ZMR3 332 aa22.67■■□□□ 1.22
LIG1-216ENST00000598938 SRGAP3O43295 1099 aa22.66■■□□□ 1.22
LIG1-216ENST00000598938 KLHDC4Q8TBB5 520 aa22.66■■□□□ 1.22
LIG1-216ENST00000598938 CLEC11AQ9Y240 323 aa22.66■■□□□ 1.22
LIG1-216ENST00000598938 PNMA6EA0A0J9YXQ4 647 aa22.65■■□□□ 1.22
LIG1-216ENST00000598938 ATP8B2P98198 1209 aa22.65■■□□□ 1.22
LIG1-216ENST00000598938 DEFB115Q30KQ5 88 aa22.65■■□□□ 1.22
LIG1-216ENST00000598938 CNTROBQ8N137 903 aa22.65■■□□□ 1.22
LIG1-216ENST00000598938 PUS3Q9BZE2 481 aaKnown RBP22.65■■□□□ 1.22
LIG1-216ENST00000598938 CNNM1Q9NRU3 951 aa22.65■■□□□ 1.22
LIG1-216ENST00000598938 NSFL1CQ9UNZ2 370 aaKnown RBP22.65■■□□□ 1.22
LIG1-216ENST00000598938 TRPM7Q96QT4 1865 aa22.64■■□□□ 1.22
LIG1-216ENST00000598938 XDHP47989 1333 aa22.64■■□□□ 1.22
LIG1-216ENST00000598938 MAP2K1Q02750 393 aaPredicted RBP22.64■■□□□ 1.21
LIG1-216ENST00000598938 CHRNDQ07001 517 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 CEP85Q6P2H3 762 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 SUPT20HQ8NEM7 779 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 JDP2Q8WYK2 163 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 CRBNQ96SW2 442 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 COPRSQ9NQ92 184 aa22.64■■□□□ 1.21
LIG1-216ENST00000598938 RIPOR2Q9Y4F9 1068 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms