RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 IGHMBP2P38935 993 aaKnown RBP24.51■■□□□ 1.51
CLN3-225ENST00000566824 RRP1P56182 461 aaKnown RBP24.51■■□□□ 1.51
CLN3-225ENST00000566824 RTFDC1Q9BY42 306 aaPredicted RBP24.51■■□□□ 1.51
CLN3-225ENST00000566824 POLLQ9UGP5 575 aa24.51■■□□□ 1.51
CLN3-225ENST00000566824 YY1P25490 414 aa24.5■■□□□ 1.51
CLN3-225ENST00000566824 MVPQ14764 893 aaKnown RBP24.5■■□□□ 1.51
CLN3-225ENST00000566824 TMX4Q9H1E5 349 aaPredicted RBP24.5■■□□□ 1.51
CLN3-225ENST00000566824 GNAI2P04899 355 aa24.49■■□□□ 1.51
CLN3-225ENST00000566824 MS4A1P11836 297 aa24.49■■□□□ 1.51
CLN3-225ENST00000566824 IARSP41252 1262 aaKnown RBP24.49■■□□□ 1.51
CLN3-225ENST00000566824 MPHOSPH8Q99549 860 aa24.49■■□□□ 1.51
CLN3-225ENST00000566824 PDE3AQ14432 1141 aa24.48■■□□□ 1.51
CLN3-225ENST00000566824 GRIPAP1Q4V328 841 aa24.48■■□□□ 1.51
CLN3-225ENST00000566824 GOLGA6L2Q8N9W4 650 aaPredicted RBP24.48■■□□□ 1.51
CLN3-225ENST00000566824 HELBQ8NG08 1087 aaPredicted RBP24.48■■□□□ 1.51
CLN3-225ENST00000566824 TBC1D16Q8TBP0 767 aa24.48■■□□□ 1.51
CLN3-225ENST00000566824 PODXL2Q9NZ53 605 aa24.48■■□□□ 1.51
CLN3-225ENST00000566824 SNAP23O00161 211 aa24.47■■□□□ 1.51
CLN3-225ENST00000566824 AOC3Q16853 763 aa24.47■■□□□ 1.51
CLN3-225ENST00000566824 LRRC24Q50LG9 513 aa24.47■■□□□ 1.51
CLN3-225ENST00000566824 TAF7LQ5H9L4 462 aa24.47■■□□□ 1.51
CLN3-225ENST00000566824 ANKIB1Q9P2G1 1089 aa24.47■■□□□ 1.51
CLN3-225ENST00000566824 PTPN12Q05209 780 aaKnown RBP24.46■■□□□ 1.51
CLN3-225ENST00000566824 CHRNDQ07001 517 aa24.46■■□□□ 1.51
CLN3-225ENST00000566824 LDHAL6AQ6ZMR3 332 aa24.46■■□□□ 1.51
CLN3-225ENST00000566824 XDHP47989 1333 aa24.45■■□□□ 1.51
CLN3-225ENST00000566824 PNMA6EA0A0J9YXQ4 647 aa24.45■■□□□ 1.5
CLN3-225ENST00000566824 C6orf229H3BNL8 230 aa24.45■■□□□ 1.5
CLN3-225ENST00000566824 TAF5LO75529 589 aa24.45■■□□□ 1.5
CLN3-225ENST00000566824 UFL1O94874 794 aa24.45■■□□□ 1.5
CLN3-225ENST00000566824 PA2G4Q9UQ80 394 aaKnown RBP24.45■■□□□ 1.5
CLN3-225ENST00000566824 RIMBP2O15034 1052 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 PPIP5K2O43314 1243 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 MTX1Q13505 466 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 CNNM1Q9NRU3 951 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 HDAC5Q9UQL6 1122 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 RIPOR2Q9Y4F9 1068 aa24.44■■□□□ 1.5
CLN3-225ENST00000566824 LARGE2Q8N3Y3 721 aa24.43■■□□□ 1.5
CLN3-225ENST00000566824 GGA1Q9UJY5 639 aa24.43■■□□□ 1.5
CLN3-225ENST00000566824 SRGAP3O43295 1099 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 KLRK1P26718 216 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 KIAA2012Q0VF49 1180 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 SUPT20HQ8NEM7 779 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 ZBTB40Q9NUA8 1239 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 DDX19BQ9UMR2 479 aa24.42■■□□□ 1.5
CLN3-225ENST00000566824 ATG9AQ7Z3C6 839 aa24.41■■□□□ 1.5
CLN3-225ENST00000566824 SIL1Q9H173 461 aa24.41■■□□□ 1.5
CLN3-225ENST00000566824 ZNF541Q9H0D2 1346 aa24.41■■□□□ 1.5
CLN3-225ENST00000566824 ATP2B4P23634 1241 aa24.4■■□□□ 1.5
CLN3-225ENST00000566824 WASHC4Q2M389 1173 aa24.4■■□□□ 1.5
CLN3-225ENST00000566824 TXNRD3Q86VQ6 643 aa24.4■■□□□ 1.5
CLN3-225ENST00000566824 ZNF526Q8TF50 670 aaPredicted RBP24.4■■□□□ 1.5
CLN3-225ENST00000566824 ANKRD2Q9GZV1 360 aa24.4■■□□□ 1.5
CLN3-225ENST00000566824 SUPT16HQ9Y5B9 1047 aaKnown RBP24.4■■□□□ 1.5
CLN3-225ENST00000566824 ATP8B2P98198 1209 aa24.39■■□□□ 1.5
CLN3-225ENST00000566824 SCN9AQ15858 1988 aa24.39■■□□□ 1.49
CLN3-225ENST00000566824 EYA2O00167 538 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 DOK7Q18PE1 504 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 CEP85Q6P2H3 762 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 ZNF784Q8NCA9 323 aaPredicted RBP24.38■■□□□ 1.49
CLN3-225ENST00000566824 COPRSQ9NQ92 184 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 ZNF804BA4D1E1 1349 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 IRS2Q9Y4H2 1338 aa24.38■■□□□ 1.49
CLN3-225ENST00000566824 FZD9O00144 591 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 POLA2Q14181 598 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 VGLL2Q8N8G2 317 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 CRBNQ96SW2 442 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 VPS33BQ9H267 617 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 DBNDD1Q9H9R9 158 aa24.37■■□□□ 1.49
CLN3-225ENST00000566824 YDJCA8MPS7 323 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 NIM1KQ8IY84 436 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 JDP2Q8WYK2 163 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 EYA3Q99504 573 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 KCNQ5Q9NR82 932 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 LEMD3Q9Y2U8 911 aa24.36■■□□□ 1.49
CLN3-225ENST00000566824 METTL24Q5JXM2 366 aa24.35■■□□□ 1.49
CLN3-225ENST00000566824 SIRT2Q8IXJ6 389 aa24.35■■□□□ 1.49
CLN3-225ENST00000566824 SSH3Q8TE77 659 aa24.35■■□□□ 1.49
CLN3-225ENST00000566824 ZC3H12CQ9C0D7 883 aaKnown RBP24.35■■□□□ 1.49
CLN3-225ENST00000566824 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP24.35■■□□□ 1.49
CLN3-225ENST00000566824 MROH5Q6ZUA9 1318 aa24.35■■□□□ 1.49
CLN3-225ENST00000566824 ZC3H4Q9UPT8 1303 aaKnown RBP24.35■■□□□ 1.49
CLN3-225ENST00000566824 MED23Q9ULK4 1368 aa24.34■■□□□ 1.49
CLN3-225ENST00000566824 CIAO1O76071 339 aa24.34■■□□□ 1.49
CLN3-225ENST00000566824 DDNO94850 711 aaPredicted RBP24.34■■□□□ 1.49
CLN3-225ENST00000566824 KCNJ4P48050 445 aa24.34■■□□□ 1.49
CLN3-225ENST00000566824 ZNRF3Q9ULT6 936 aa24.34■■□□□ 1.49
CLN3-225ENST00000566824 GLTPD2A6NH11 291 aa24.33■■□□□ 1.48
CLN3-225ENST00000566824 ECE2O60344 883 aa24.33■■□□□ 1.48
CLN3-225ENST00000566824 ZNF646O15015 1829 aaPredicted RBP24.32■■□□□ 1.48
CLN3-225ENST00000566824 RAD17O75943 681 aa24.32■■□□□ 1.48
CLN3-225ENST00000566824 PDE8BO95263 885 aa24.32■■□□□ 1.48
CLN3-225ENST00000566824 CXCL9Q07325 125 aa24.32■■□□□ 1.48
CLN3-225ENST00000566824 NMRK2Q9NPI5 230 aa24.32■■□□□ 1.48
CLN3-225ENST00000566824 PSME4Q14997 1843 aa24.3■■□□□ 1.48
CLN3-225ENST00000566824 FGFR2P21802 821 aa24.3■■□□□ 1.48
CLN3-225ENST00000566824 IL15P40933 162 aaPredicted RBP24.3■■□□□ 1.48
CLN3-225ENST00000566824 FBXO3Q9UK99 471 aa24.3■■□□□ 1.48
CLN3-225ENST00000566824 WDR90Q96KV7 1748 aa24.29■■□□□ 1.48
CLN3-225ENST00000566824 POTECB2RU33 542 aa24.29■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms