RNA–Protein interactions for RNA: ENST00000562626.1

CLK3-208, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 812 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-208ENST00000562626 GNAI2P04899 355 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 MS4A1P11836 297 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 HSPA6P17066 643 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 GPSM2P81274 684 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 IFIT5Q13325 482 aaKnown RBP12.27□□□□□ -0.45
CLK3-208ENST00000562626 LRRC24Q50LG9 513 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 ANKRD18AQ8IVF6 992 aa12.27□□□□□ -0.45
CLK3-208ENST00000562626 PA2G4Q9UQ80 394 aaKnown RBP12.27□□□□□ -0.45
CLK3-208ENST00000562626 PTPN12Q05209 780 aaKnown RBP12.26□□□□□ -0.45
CLK3-208ENST00000562626 MTX1Q13505 466 aa12.26□□□□□ -0.45
CLK3-208ENST00000562626 CCDC93Q567U6 631 aa12.26□□□□□ -0.45
CLK3-208ENST00000562626 SIRT2Q8IXJ6 389 aa12.26□□□□□ -0.45
CLK3-208ENST00000562626 CDC5LQ99459 802 aaKnown RBP12.26□□□□□ -0.45
CLK3-208ENST00000562626 DDX19BQ9UMR2 479 aa12.26□□□□□ -0.45
CLK3-208ENST00000562626 MINPP1Q9UNW1 487 aa12.26□□□□□ -0.45
CLK3-208ENST00000562626 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP12.26□□□□□ -0.45
CLK3-208ENST00000562626 KLRK1P26718 216 aa12.25□□□□□ -0.45
CLK3-208ENST00000562626 CCDC57Q2TAC2 916 aa12.25□□□□□ -0.45
CLK3-208ENST00000562626 CEP85Q6P2H3 762 aa12.25□□□□□ -0.45
CLK3-208ENST00000562626 HELBQ8NG08 1087 aaPredicted RBP12.25□□□□□ -0.45
CLK3-208ENST00000562626 BSDC1Q9NW68 430 aaPredicted RBP12.25□□□□□ -0.45
CLK3-208ENST00000562626 POLLQ9UGP5 575 aa12.25□□□□□ -0.45
CLK3-208ENST00000562626 AKAP11Q9UKA4 1901 aa12.25□□□□□ -0.45
CLK3-208ENST00000562626 SRGAP3O43295 1099 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 GRIN3BO60391 1043 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 TAF5LO75529 589 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 IGHMBP2P38935 993 aaKnown RBP12.24□□□□□ -0.45
CLK3-208ENST00000562626 ATP8B2P98198 1209 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 CHRNDQ07001 517 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 POLA2Q14181 598 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 ATG9AQ7Z3C6 839 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 ADAMTSL1Q8N6G6 1762 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 EXOC6Q8TAG9 804 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 SIL1Q9H173 461 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 TAOK3Q9H2K8 898 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 ZNF277Q9NRM2 450 aaPredicted RBP12.24□□□□□ -0.45
CLK3-208ENST00000562626 LTBP3Q9NS15 1303 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 NSFL1CQ9UNZ2 370 aaKnown RBP12.24□□□□□ -0.45
CLK3-208ENST00000562626 RIPOR2Q9Y4F9 1068 aa12.24□□□□□ -0.45
CLK3-208ENST00000562626 IRS2Q9Y4H2 1338 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 FKBP4Q02790 459 aaKnown RBP eCLIP12.23□□□□□ -0.45
CLK3-208ENST00000562626 COL13A1Q5TAT6 717 aaPredicted RBP12.23□□□□□ -0.45
CLK3-208ENST00000562626 MPNDQ8N594 471 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 TBC1D16Q8TBP0 767 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 SSH3Q8TE77 659 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 MPHOSPH8Q99549 860 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 COPRSQ9NQ92 184 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 PCDHB15Q9Y5E8 787 aa12.23□□□□□ -0.45
CLK3-208ENST00000562626 TAF7LQ5H9L4 462 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 CC2D2BQ6DHV5 1058 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 DPP8Q6V1X1 898 aaPredicted RBP12.22□□□□□ -0.45
CLK3-208ENST00000562626 LDHAL6AQ6ZMR3 332 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 TMC4Q7Z404 712 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 TXNRD3Q86VQ6 643 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 TNS4Q8IZW8 715 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 VGLL2Q8N8G2 317 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 PSMD1Q99460 953 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 RTFDC1Q9BY42 306 aaPredicted RBP12.22□□□□□ -0.45
CLK3-208ENST00000562626 CNNM1Q9NRU3 951 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 PODXL2Q9NZ53 605 aa12.22□□□□□ -0.45
CLK3-208ENST00000562626 XDHP47989 1333 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 EYA2O00167 538 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 UFL1O94874 794 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 AOC3Q16853 763 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 SOGA3Q5TF21 947 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 C9orf131Q5VYM1 1079 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 RTKN2Q8IZC4 609 aa12.21□□□□□ -0.45
CLK3-208ENST00000562626 POLR2AP24928 1970 aaKnown RBP12.21□□□□□ -0.46
CLK3-208ENST00000562626 RIMBP2O15034 1052 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 SASH1O94885 1247 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 LMNB1P20700 586 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 IARSP41252 1262 aaKnown RBP12.2□□□□□ -0.46
CLK3-208ENST00000562626 RNF181Q9P0P0 153 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 ANKIB1Q9P2G1 1089 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 WDR90Q96KV7 1748 aa12.2□□□□□ -0.46
CLK3-208ENST00000562626 SCN4AP35499 1836 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 YDJCA8MPS7 323 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 C6orf229H3BNL8 230 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 GGA1Q9UJY5 639 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 HDAC5Q9UQL6 1122 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 MYH7P12883 1935 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 ZNF609O15014 1411 aa12.19□□□□□ -0.46
CLK3-208ENST00000562626 ECM29Q5VYK3 1845 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 ZNF804BA4D1E1 1349 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 ZNF541Q9H0D2 1346 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 PPIP5K2O43314 1243 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 CIAO1O76071 339 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 KIAA2012Q0VF49 1180 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 DOK7Q18PE1 504 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 METTL24Q5JXM2 366 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 KCNQ5Q9NR82 932 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 EXOC6BQ9Y2D4 811 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 MED23Q9ULK4 1368 aa12.18□□□□□ -0.46
CLK3-208ENST00000562626 MROH5Q6ZUA9 1318 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 DOCK2Q92608 1830 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 PDE8BO95263 885 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 FGFR2P21802 821 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 ATP2B4P23634 1241 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 TFCP2Q12800 502 aa12.17□□□□□ -0.46
CLK3-208ENST00000562626 RPAP2Q8IXW5 612 aaPredicted RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms