RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 FAM155AB1AL88 458 aaPredicted RBP21.31■■□□□ 1
CLN3-208ENST00000561505 RIMBP2O15034 1052 aa21.31■■□□□ 1
CLN3-208ENST00000561505 GNAI1P63096 354 aa21.31■■□□□ 1
CLN3-208ENST00000561505 GRM1Q13255 1194 aa21.31■■□□□ 1
CLN3-208ENST00000561505 DLK2Q6UY11 383 aa21.31■■□□□ 1
CLN3-208ENST00000561505 SEC31BQ9NQW1 1179 aa21.31■■□□□ 1
CLN3-208ENST00000561505 SCN9AQ15858 1988 aa21.3■■□□□ 1
CLN3-208ENST00000561505 ZNF280AP59817 542 aaPredicted RBP21.3■■□□□ 1
CLN3-208ENST00000561505 GOLGA2Q08379 1002 aa21.3■■□□□ 1
CLN3-208ENST00000561505 TBC1D10BQ4KMP7 808 aaPredicted RBP21.3■■□□□ 1
CLN3-208ENST00000561505 RTL5Q5HYW3 569 aaPredicted RBP21.3■■□□□ 1
CLN3-208ENST00000561505 KRT26Q7Z3Y9 468 aa21.3■■□□□ 1
CLN3-208ENST00000561505 RIC3Q7Z5B4 369 aa21.3■■□□□ 1
CLN3-208ENST00000561505 ZIC5Q96T25 663 aa21.3■■□□□ 1
CLN3-208ENST00000561505 ZC3H12CQ9C0D7 883 aaKnown RBP21.3■■□□□ 1
CLN3-208ENST00000561505 PDE8AO60658 829 aa21.29■■□□□ 1
CLN3-208ENST00000561505 HUNKP57058 714 aa21.29■■□□□ 1
CLN3-208ENST00000561505 CALD1Q05682 793 aaKnown RBP21.29■■□□□ 1
CLN3-208ENST00000561505 DOK7Q18PE1 504 aa21.29■■□□□ 1
CLN3-208ENST00000561505 GMLQ99445 158 aa21.29■■□□□ 1
CLN3-208ENST00000561505 METTL22Q9BUU2 404 aaPredicted RBP21.29■■□□□ 1
CLN3-208ENST00000561505 GBA2Q9HCG7 927 aaPredicted RBP21.29■■□□□ 1
CLN3-208ENST00000561505 APAF1O14727 1248 aa21.28■■□□□ 1
CLN3-208ENST00000561505 C8orf58Q8NAV2 365 aa21.28■■□□□ 1
CLN3-208ENST00000561505 AGBL3Q8NEM8 1001 aa21.28■■□□□ 1
CLN3-208ENST00000561505 ZNF408Q9H9D4 720 aa21.28■■□□□ 1
CLN3-208ENST00000561505 TSKSQ9UJT2 592 aa21.28■■□□□ 1
CLN3-208ENST00000561505 POLR2AP24928 1970 aaKnown RBP21.27■■□□□ 1
CLN3-208ENST00000561505 CCDC152Q4G0S7 254 aa21.27■■□□□ 1
CLN3-208ENST00000561505 RGMBQ6NW40 437 aa21.27■■□□□ 1
CLN3-208ENST00000561505 DCPSQ96C86 337 aaKnown RBP21.27■■□□□ 1
CLN3-208ENST00000561505 MYD88Q99836 296 aa21.27■■□□□ 1
CLN3-208ENST00000561505 CHMP4AQ9BY43 222 aa21.27■■□□□ 1
CLN3-208ENST00000561505 KIF4BQ2VIQ3 1234 aa21.26■□□□□ 0.99
CLN3-208ENST00000561505 C2orf69Q8N8R5 385 aa21.26■□□□□ 0.99
CLN3-208ENST00000561505 CCDC102AQ96A19 550 aa21.26■□□□□ 0.99
CLN3-208ENST00000561505 CWC25Q9NXE8 425 aaPredicted RBP21.26■□□□□ 0.99
CLN3-208ENST00000561505 SAGE1Q9NXZ1 904 aa21.26■□□□□ 0.99
CLN3-208ENST00000561505 GGA1Q9UJY5 639 aa21.26■□□□□ 0.99
CLN3-208ENST00000561505 PSME4Q14997 1843 aa21.25■□□□□ 0.99
CLN3-208ENST00000561505 ADM5C9JUS6 153 aa21.25■□□□□ 0.99
CLN3-208ENST00000561505 RSBN1LQ6PCB5 846 aaPredicted RBP21.25■□□□□ 0.99
CLN3-208ENST00000561505 MCOLN1Q9GZU1 580 aa21.25■□□□□ 0.99
CLN3-208ENST00000561505 UFL1O94874 794 aa21.24■□□□□ 0.99
CLN3-208ENST00000561505 PODNQ7Z5L7 613 aa21.24■□□□□ 0.99
CLN3-208ENST00000561505 XDHP47989 1333 aa21.24■□□□□ 0.99
CLN3-208ENST00000561505 ELL2O00472 640 aaPredicted RBP21.23■□□□□ 0.99
CLN3-208ENST00000561505 IGKV5-2P06315 115 aa21.23■□□□□ 0.99
CLN3-208ENST00000561505 CCDC30Q5VVM6 783 aa21.23■□□□□ 0.99
CLN3-208ENST00000561505 ANKIB1Q9P2G1 1089 aa21.23■□□□□ 0.99
CLN3-208ENST00000561505 DDX58O95786 925 aaKnown RBP21.22■□□□□ 0.99
CLN3-208ENST00000561505 FAM161AQ3B820 660 aa21.22■□□□□ 0.99
CLN3-208ENST00000561505 RBM26Q5T8P6 1007 aaKnown RBP21.22■□□□□ 0.99
CLN3-208ENST00000561505 GGA3Q9NZ52 723 aa21.22■□□□□ 0.99
CLN3-208ENST00000561505 CASP8AP2Q9UKL3 1982 aa21.22■□□□□ 0.99
CLN3-208ENST00000561505 ASTN2O75129 1339 aaPredicted RBP21.22■□□□□ 0.99
CLN3-208ENST00000561505 PITPNM2Q9BZ72 1349 aa21.22■□□□□ 0.99
CLN3-208ENST00000561505 SLC10A3P09131 477 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 ATP2B4P23634 1241 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 KIF23Q02241 960 aaPredicted RBP21.21■□□□□ 0.99
CLN3-208ENST00000561505 KSR2Q6VAB6 950 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 ANKRD18AQ8IVF6 992 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 SULF1Q8IWU6 871 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 TTLL11Q8NHH1 800 aa21.21■□□□□ 0.99
CLN3-208ENST00000561505 CCDC85CA6NKD9 419 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 FKBP1BP68106 108 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 SCARF1Q14162 830 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 TSPYL6Q8N831 410 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 CDCA5Q96FF9 252 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 BSDC1Q9NW68 430 aaPredicted RBP21.2■□□□□ 0.98
CLN3-208ENST00000561505 MAP3K2Q9Y2U5 619 aa21.2■□□□□ 0.98
CLN3-208ENST00000561505 CTSWP56202 376 aa21.19■□□□□ 0.98
CLN3-208ENST00000561505 MLLT1Q03111 559 aaPredicted RBP21.19■□□□□ 0.98
CLN3-208ENST00000561505 CCDC27Q2M243 656 aa21.19■□□□□ 0.98
CLN3-208ENST00000561505 NCBP3Q53F19 620 aaKnown RBP21.19■□□□□ 0.98
CLN3-208ENST00000561505 REM2Q8IYK8 340 aaPredicted RBP21.19■□□□□ 0.98
CLN3-208ENST00000561505 JARID2Q92833 1246 aaPredicted RBP21.19■□□□□ 0.98
CLN3-208ENST00000561505 CSRNP1Q96S65 589 aa21.19■□□□□ 0.98
CLN3-208ENST00000561505 MINPP1Q9UNW1 487 aa21.19■□□□□ 0.98
CLN3-208ENST00000561505 MED23Q9ULK4 1368 aa21.19■□□□□ 0.98
CLN3-208ENST00000561505 PI4KAP2A4QPH2 592 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 USP17L3A6NCW0 530 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 USP17L4A6NCW7 530 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 USP17L8P0C7I0 530 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 ZNF157P51786 506 aaPredicted RBP21.18■□□□□ 0.98
CLN3-208ENST00000561505 ANGEL2Q5VTE6 544 aaKnown RBP21.18■□□□□ 0.98
CLN3-208ENST00000561505 USP17L1Q7RTZ2 530 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 PI4KAP1Q8N8J0 262 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 CDC5LQ99459 802 aaKnown RBP21.18■□□□□ 0.98
CLN3-208ENST00000561505 MYOZ2Q9NPC6 264 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 RNF186Q9NXI6 227 aa21.18■□□□□ 0.98
CLN3-208ENST00000561505 WTIPA6NIX2 430 aaPredicted RBP21.17■□□□□ 0.98
CLN3-208ENST00000561505 H7C1W4 665 aa21.17■□□□□ 0.98
CLN3-208ENST00000561505 MMP14P50281 582 aa21.17■□□□□ 0.98
CLN3-208ENST00000561505 DGKZQ13574 1117 aa21.17■□□□□ 0.98
CLN3-208ENST00000561505 ZNF646O15015 1829 aaPredicted RBP21.17■□□□□ 0.98
CLN3-208ENST00000561505 G3V3G9 751 aa21.16■□□□□ 0.98
CLN3-208ENST00000561505 DACT2Q5SW24 774 aa21.16■□□□□ 0.98
CLN3-208ENST00000561505 DCAF8Q5TAQ9 597 aa21.16■□□□□ 0.98
CLN3-208ENST00000561505 PLA2G12BQ9BX93 195 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms