RNA–Protein interactions for RNA: ENST00000560213.1

LRRC28-217, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-217ENST00000560213 ZNF277Q9NRM2 450 aaPredicted RBP20.39■□□□□ 0.85
LRRC28-217ENST00000560213 CNNM1Q9NRU3 951 aa20.39■□□□□ 0.85
LRRC28-217ENST00000560213 RNF181Q9P0P0 153 aa20.39■□□□□ 0.85
LRRC28-217ENST00000560213 C6orf229H3BNL8 230 aa20.38■□□□□ 0.85
LRRC28-217ENST00000560213 RTFDC1Q9BY42 306 aaPredicted RBP20.38■□□□□ 0.85
LRRC28-217ENST00000560213 C1orf115Q9H7X2 142 aa20.38■□□□□ 0.85
LRRC28-217ENST00000560213 SRGAP3O43295 1099 aa20.37■□□□□ 0.85
LRRC28-217ENST00000560213 PRELPP51888 382 aa20.37■□□□□ 0.85
LRRC28-217ENST00000560213 ANKRD2Q9GZV1 360 aa20.37■□□□□ 0.85
LRRC28-217ENST00000560213 PODXL2Q9NZ53 605 aa20.37■□□□□ 0.85
LRRC28-217ENST00000560213 SUPT16HQ9Y5B9 1047 aaKnown RBP20.37■□□□□ 0.85
LRRC28-217ENST00000560213 XDHP47989 1333 aa20.36■□□□□ 0.85
LRRC28-217ENST00000560213 IARSP41252 1262 aaKnown RBP20.36■□□□□ 0.85
LRRC28-217ENST00000560213 RFX5P48382 616 aaPredicted RBP20.36■□□□□ 0.85
LRRC28-217ENST00000560213 CHRNDQ07001 517 aa20.36■□□□□ 0.85
LRRC28-217ENST00000560213 MTX1Q13505 466 aa20.36■□□□□ 0.85
LRRC28-217ENST00000560213 KLHDC4Q8TBB5 520 aa20.36■□□□□ 0.85
LRRC28-217ENST00000560213 GGA1Q9UJY5 639 aa20.36■□□□□ 0.85
LRRC28-217ENST00000560213 UFL1O94874 794 aa20.35■□□□□ 0.85
LRRC28-217ENST00000560213 ATP2B4P23634 1241 aa20.35■□□□□ 0.85
LRRC28-217ENST00000560213 TBC1D16Q8TBP0 767 aa20.35■□□□□ 0.85
LRRC28-217ENST00000560213 PUS3Q9BZE2 481 aaKnown RBP20.35■□□□□ 0.85
LRRC28-217ENST00000560213 VPS33BQ9H267 617 aa20.35■□□□□ 0.85
LRRC28-217ENST00000560213 POLLQ9UGP5 575 aa20.35■□□□□ 0.85
LRRC28-217ENST00000560213 DICER1Q9UPY3 1922 aaKnown RBP20.34■□□□□ 0.85
LRRC28-217ENST00000560213 PPIP5K2O43314 1243 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 ATP8B2P98198 1209 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 PTPN12Q05209 780 aaKnown RBP20.34■□□□□ 0.85
LRRC28-217ENST00000560213 WASHC4Q2M389 1173 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 LARGE2Q8N3Y3 721 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 HELBQ8NG08 1087 aaPredicted RBP20.34■□□□□ 0.85
LRRC28-217ENST00000560213 EYA3Q99504 573 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 ZBTB40Q9NUA8 1239 aa20.34■□□□□ 0.85
LRRC28-217ENST00000560213 YY1P25490 414 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 AOC3Q16853 763 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 LRRC24Q50LG9 513 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 JDP2Q8WYK2 163 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 LEMD3Q9Y2U8 911 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 RIPOR2Q9Y4F9 1068 aa20.33■□□□□ 0.85
LRRC28-217ENST00000560213 PNMA6EA0A0J9YXQ4 647 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 EYA2O00167 538 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 RIMBP2O15034 1052 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 TAF5LO75529 589 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 KCNJ4P48050 445 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 ZC3H12CQ9C0D7 883 aaKnown RBP20.32■□□□□ 0.84
LRRC28-217ENST00000560213 SIL1Q9H173 461 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 COPRSQ9NQ92 184 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 FBXO3Q9UK99 471 aa20.32■□□□□ 0.84
LRRC28-217ENST00000560213 MROH5Q6ZUA9 1318 aa20.31■□□□□ 0.84
LRRC28-217ENST00000560213 LTBP1Q14766 1721 aa20.31■□□□□ 0.84
LRRC28-217ENST00000560213 KIAA2012Q0VF49 1180 aa20.31■□□□□ 0.84
LRRC28-217ENST00000560213 METTL24Q5JXM2 366 aa20.31■□□□□ 0.84
LRRC28-217ENST00000560213 PA2G4Q9UQ80 394 aaKnown RBP20.31■□□□□ 0.84
LRRC28-217ENST00000560213 GOLGB1Q14789 3259 aaKnown RBP20.31■□□□□ 0.84
LRRC28-217ENST00000560213 ZNF804BA4D1E1 1349 aa20.3■□□□□ 0.84
LRRC28-217ENST00000560213 DUOX1Q9NRD9 1551 aa20.3■□□□□ 0.84
LRRC28-217ENST00000560213 CEP85Q6P2H3 762 aa20.3■□□□□ 0.84
LRRC28-217ENST00000560213 NIM1KQ8IY84 436 aa20.3■□□□□ 0.84
LRRC28-217ENST00000560213 GPR101Q96P66 508 aaPredicted RBP20.3■□□□□ 0.84
LRRC28-217ENST00000560213 ZC3H4Q9UPT8 1303 aaKnown RBP20.29■□□□□ 0.84
LRRC28-217ENST00000560213 G3V3G9 751 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 CIAO1O76071 339 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 POLA2Q14181 598 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 DCAF8Q5TAQ9 597 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 RPAP2Q8IXW5 612 aaPredicted RBP20.29■□□□□ 0.84
LRRC28-217ENST00000560213 SSH3Q8TE77 659 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 CRBNQ96SW2 442 aa20.29■□□□□ 0.84
LRRC28-217ENST00000560213 WTIPA6NIX2 430 aaPredicted RBP20.28■□□□□ 0.84
LRRC28-217ENST00000560213 IL15P40933 162 aaPredicted RBP20.28■□□□□ 0.84
LRRC28-217ENST00000560213 ATG9AQ7Z3C6 839 aa20.28■□□□□ 0.84
LRRC28-217ENST00000560213 TIAM2Q8IVF5 1701 aa20.27■□□□□ 0.84
LRRC28-217ENST00000560213 A0A1B0GUL6 1792 aa20.27■□□□□ 0.84
LRRC28-217ENST00000560213 G3BP1Q13283 466 aaKnown RBP eCLIP20.27■□□□□ 0.84
LRRC28-217ENST00000560213 DPY19L2Q6NUT2 758 aa20.27■□□□□ 0.84
LRRC28-217ENST00000560213 CEP126Q9P2H0 1117 aa20.27■□□□□ 0.84
LRRC28-217ENST00000560213 SNAP23O00161 211 aa20.26■□□□□ 0.83
LRRC28-217ENST00000560213 PDE8BO95263 885 aa20.26■□□□□ 0.83
LRRC28-217ENST00000560213 EIF6P56537 245 aaKnown RBP20.26■□□□□ 0.83
LRRC28-217ENST00000560213 UBE4AQ14139 1066 aa20.26■□□□□ 0.83
LRRC28-217ENST00000560213 DOK7Q18PE1 504 aa20.26■□□□□ 0.83
LRRC28-217ENST00000560213 ZNRF3Q9ULT6 936 aa20.26■□□□□ 0.83
LRRC28-217ENST00000560213 MED23Q9ULK4 1368 aa20.25■□□□□ 0.83
LRRC28-217ENST00000560213 FZD9O00144 591 aa20.25■□□□□ 0.83
LRRC28-217ENST00000560213 HMMRO75330 724 aa20.25■□□□□ 0.83
LRRC28-217ENST00000560213 SURF6O75683 361 aaKnown RBP20.25■□□□□ 0.83
LRRC28-217ENST00000560213 DBNDD1Q9H9R9 158 aa20.25■□□□□ 0.83
LRRC28-217ENST00000560213 COL4A5P29400 1685 aa20.24■□□□□ 0.83
LRRC28-217ENST00000560213 OS9Q13438 667 aaPredicted RBP20.24■□□□□ 0.83
LRRC28-217ENST00000560213 VGLL2Q8N8G2 317 aa20.24■□□□□ 0.83
LRRC28-217ENST00000560213 ECE2O60344 883 aa20.23■□□□□ 0.83
LRRC28-217ENST00000560213 C15orf52Q6ZUT6 534 aaKnown RBP20.23■□□□□ 0.83
LRRC28-217ENST00000560213 TXNRD3Q86VQ6 643 aa20.23■□□□□ 0.83
LRRC28-217ENST00000560213 GLTPD2A6NH11 291 aa20.22■□□□□ 0.83
LRRC28-217ENST00000560213 KLRK1P26718 216 aa20.22■□□□□ 0.83
LRRC28-217ENST00000560213 PUM3Q15397 648 aaKnown RBP20.22■□□□□ 0.83
LRRC28-217ENST00000560213 SIRT2Q8IXJ6 389 aa20.22■□□□□ 0.83
LRRC28-217ENST00000560213 ZNF526Q8TF50 670 aaPredicted RBP20.22■□□□□ 0.83
LRRC28-217ENST00000560213 NOP58Q9Y2X3 529 aaKnown RBP20.22■□□□□ 0.83
LRRC28-217ENST00000560213 KDM2BQ8NHM5 1336 aa20.22■□□□□ 0.83
LRRC28-217ENST00000560213 IFIT1P09914 478 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms