RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 AAMPQ13685 434 aa15.95■□□□□ 0.14
SHMT2-227ENST00000557269 HELBQ8NG08 1087 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-227ENST00000557269 CNNM1Q9NRU3 951 aa15.95■□□□□ 0.14
SHMT2-227ENST00000557269 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP15.95■□□□□ 0.14
SHMT2-227ENST00000557269 SNAP23O00161 211 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 TAF5LO75529 589 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 CHRNDQ07001 517 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 GPR162Q16538 588 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 TMC4Q7Z404 712 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 ARFGEF1Q9Y6D6 1849 aa15.94■□□□□ 0.14
SHMT2-227ENST00000557269 SURF6O75683 361 aaKnown RBP15.93■□□□□ 0.14
SHMT2-227ENST00000557269 CIAO1O76071 339 aa15.93■□□□□ 0.14
SHMT2-227ENST00000557269 IGHDP01880 384 aa15.93■□□□□ 0.14
SHMT2-227ENST00000557269 CCDC93Q567U6 631 aa15.93■□□□□ 0.14
SHMT2-227ENST00000557269 NSFL1CQ9UNZ2 370 aaKnown RBP15.93■□□□□ 0.14
SHMT2-227ENST00000557269 EXOC6BQ9Y2D4 811 aa15.93■□□□□ 0.14
SHMT2-227ENST00000557269 NOP58Q9Y2X3 529 aaKnown RBP15.93■□□□□ 0.14
SHMT2-227ENST00000557269 LTBP1Q14766 1721 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 NFKBIEO00221 500 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 NEFLP07196 543 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 PRELPP51888 382 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 VGLL2Q8N8G2 317 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 GPR101Q96P66 508 aaPredicted RBP15.92■□□□□ 0.14
SHMT2-227ENST00000557269 POLLQ9UGP5 575 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 DUOX1Q9NRD9 1551 aa15.92■□□□□ 0.14
SHMT2-227ENST00000557269 HMMRO75330 724 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 SASH1O94885 1247 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 IL15P40933 162 aaPredicted RBP15.91■□□□□ 0.14
SHMT2-227ENST00000557269 RASSF7Q02833 373 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 METTL24Q5JXM2 366 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 CC2D2BQ6DHV5 1058 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 ARHGAP27Q6ZUM4 889 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 MPNDQ8N594 471 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 PODXL2Q9NZ53 605 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 ANKIB1Q9P2G1 1089 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 FBXO3Q9UK99 471 aa15.91■□□□□ 0.14
SHMT2-227ENST00000557269 A0A1B0GUL6 1792 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 TFCP2Q12800 502 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 G3BP1Q13283 466 aaKnown RBP eCLIP15.9■□□□□ 0.148e-8■■■□□ 16.6
SHMT2-227ENST00000557269 HDAC1Q13547 482 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-227ENST00000557269 SOGA3Q5TF21 947 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 DPP8Q6V1X1 898 aaPredicted RBP15.9■□□□□ 0.14
SHMT2-227ENST00000557269 RTKN2Q8IZC4 609 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 TBC1D16Q8TBP0 767 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 ANKRD2Q9GZV1 360 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 DCTPP1Q9H773 170 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 XDHP47989 1333 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 MROH5Q6ZUA9 1318 aa15.9■□□□□ 0.14
SHMT2-227ENST00000557269 GOLGB1Q14789 3259 aaKnown RBP15.9■□□□□ 0.14
SHMT2-227ENST00000557269 FER1L6Q2WGJ9 1857 aa15.89■□□□□ 0.13
SHMT2-227ENST00000557269 APBB1O00213 710 aa15.89■□□□□ 0.13
SHMT2-227ENST00000557269 KLRK1P26718 216 aa15.89■□□□□ 0.13
SHMT2-227ENST00000557269 RTFDC1Q9BY42 306 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-227ENST00000557269 TMX4Q9H1E5 349 aaPredicted RBP15.89■□□□□ 0.13
SHMT2-227ENST00000557269 UFL1O94874 794 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 PDE8BO95263 885 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 FKBP4Q02790 459 aaKnown RBP eCLIP15.88■□□□□ 0.13
SHMT2-227ENST00000557269 OS9Q13438 667 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-227ENST00000557269 PSMD1Q99460 953 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 TAOK3Q9H2K8 898 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 ZNF277Q9NRM2 450 aaPredicted RBP15.88■□□□□ 0.13
SHMT2-227ENST00000557269 CEP126Q9P2H0 1117 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 GGA1Q9UJY5 639 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 IRS2Q9Y4H2 1338 aa15.88■□□□□ 0.13
SHMT2-227ENST00000557269 C6orf229H3BNL8 230 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 ATP2B4P23634 1241 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 GRIPAP1Q4V328 841 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 TXNRD3Q86VQ6 643 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 LEMD3Q9Y2U8 911 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 ZNF804BA4D1E1 1349 aa15.87■□□□□ 0.13
SHMT2-227ENST00000557269 RIMBP2O15034 1052 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 GRIN3BO60391 1043 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 FGFR2P21802 821 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 RHPN1Q8TCX5 695 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 RWDD1Q9H446 243 aaPredicted RBP15.86■□□□□ 0.13
SHMT2-227ENST00000557269 LTBP3Q9NS15 1303 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 COL4A5P29400 1685 aa15.86■□□□□ 0.13
SHMT2-227ENST00000557269 SMARCA5O60264 1052 aaPredicted RBP15.85■□□□□ 0.13
SHMT2-227ENST00000557269 TIMM10P62072 90 aa15.85■□□□□ 0.13
SHMT2-227ENST00000557269 PUM3Q15397 648 aaKnown RBP15.85■□□□□ 0.13
SHMT2-227ENST00000557269 AOC3Q16853 763 aa15.85■□□□□ 0.13
SHMT2-227ENST00000557269 IL1RAPL2Q9NP60 686 aa15.85■□□□□ 0.13
SHMT2-227ENST00000557269 RAB11FIP3O75154 756 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 ADORA1P30542 326 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 KCNJ4P48050 445 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 UBE4AQ14139 1066 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 ATP2B3Q16720 1220 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 HSP90AB4PQ58FF6 505 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 ERC1Q8IUD2 1116 aa15.84■□□□□ 0.13
SHMT2-227ENST00000557269 A0A1B0GUL7 405 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 IARSP41252 1262 aaKnown RBP15.83■□□□□ 0.12
SHMT2-227ENST00000557269 DOK7Q18PE1 504 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 WASHC4Q2M389 1173 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 TNNI3KQ59H18 835 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 SMC5Q8IY18 1101 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 SUPT20HQ8NEM7 779 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 EAF2Q96CJ1 260 aaPredicted RBP15.83■□□□□ 0.12
SHMT2-227ENST00000557269 KIF1BPQ96EK5 621 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 BCL11AQ9H165 835 aa15.83■□□□□ 0.12
SHMT2-227ENST00000557269 FPGT-TNNI3KV9GXZ4 949 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 123.8 ms